Oncorhynchus kisutch (coho salmon): 109883088
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Entry
109883088 CDS
T09179
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03272
Virion - Hepatitis viruses
oki04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
109883088
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109883088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109883088
Membrane trafficking [BR:
oki04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
109883088
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
109883088
NCBI-ProteinID:
XP_031683581
Ensembl:
ENSOKIG00005017598
LinkDB
All DBs
Position
LG6:77672954..77684268
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AA seq
880 aa
AA seq
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MGRLLCVLLVFLACCVVQTNTETVCGTRQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CLARTCGTTEFSCGGHLNQCVPSTWICDGKADCENGADEESCAPKHCTDNKFHCSNGQCV
SASFVCDEELDCDDGSDEASCPPTTCSSTSFQCNNSVCVPRLWACDGDVDCSDGSDEWPQ
NCGTRAPGGAPKPCSLREFQCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEMGCVNVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLTDKKRCEDIDECANPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PRLKNAVALDMDMVAKEIYWSDLSQKKIYSTSMDLAADTAQHKVVIDSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFQNDLAKPRAIVVDPHSNFVYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLVSPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGLHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPIV
PASNPPPAPARTSTAPPARVTTKAPIIATTVTPAPPRTTKPVPRNPQPAQPDRPRIPQAQ
TTTVPQITTQDIRHEFAAIPTAPSTPAALYIGLPIAIVCLVAFGAVLLWRNYRLKNTNTI
HFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggggcggctgctgtgcgtgctgttggtgttcctggcttgctgtgttgtccaaacaaac
acagagacagtatgcgggaccaggcagttcctgtgtgggaacgggaagtgcattacgctg
agatgggtgtgtgatgacacagatgattgtggagatggaactgacgagctccccggaacc
tgcttggccagaacatgcggaaccacagagttcagctgtggtggacatctgaaccagtgt
gttcccagtacctggatctgtgacggcaaagcagactgtgagaatggagctgatgaggag
agctgtgcgcccaagcactgcacagataacaaattccactgcagtaacggccagtgtgtg
tcggcctcctttgtgtgtgatgaggagttggactgtgatgacgggagcgacgaggcttcc
tgcccacccaccacctgtagctccacctccttccagtgcaacaactctgtgtgtgtgccg
cgcctgtgggcctgcgacggagacgttgactgctcggatggctccgacgagtggccccag
aactgtgggactcgagcccctgggggtgcccccaagccctgctcccttcgggagttccaa
tgtggcagcggggagtgtatccacagcagctggaaatgtgatggaggattcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgc
ggtgatggcacctgtatccacggcggtcgccaatgtaaccgccagtacgactgcagagac
ttgagtgatgaaatgggctgtgtcaatgtgagccattgcaagggtcccaccaggtttaag
tgccgtagtggggagtgcatcagtatggagaaggtgtgtgacaagcagcgtgactgcagg
gactggtcagatgagcctctcagagagtgtgattccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacttgaagatcggctatgagtgccaatgccccaccggc
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccaacccagacatc
tgcagccagatctgtgtcaatcatatgggcagctacaagtgtgagtgtgaggagggctac
caggtcgacccagccactaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacgcgtgtcatc
ccccgcctgaagaatgcagtggctctggacatggacatggttgccaaggagatttactgg
tctgacctctcccagaagaagatctacagcacctcaatggacttggctgcagacacagcg
caacacaaagttgtgattgacagcgacatcgaagctccggagggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctctgtgtcaactgcc
aacgggagccgtcgcaagactctcttccagaatgacctggccaagccccgcgctattgtg
gtcgacccccacagcaacttcgtgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacgacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtatcgacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaacaatgccattctgagtgccaaccgtgtgacaggcagggacatcaagcctgtggca
gagcacctggtatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcctacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccattgtt
cccgcctccaaccccccaccggcacccgcccgcacctccactgcacctccagcccgcgtc
accactaaggcccccatcatcgctaccacagttacgcctgcacctccccgcactaccaag
cctgtgccacgcaacccccagcctgcccagccagatagacccaggatcccccaggcccag
actaccacagtgcctcaaatcaccactcaggacatccgccatgaatttgctgctataccc
acagccccttcaacccctgcagctttatacatcgggctgcctatagccattgtgtgtctg
gtggcttttggtgccgtgctgctgtggaggaactacaggctgaagaacaccaacaccatt
cactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgcaggagc
cacagtccagacggctactcctacccaccgagacagattgtgagtcttgatgatgaggct
tga
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