KEGG   Oncorhynchus kisutch (coho salmon): 109886714
Entry
109886714         CDS       T09179                                 
Name
(RefSeq) low-density lipoprotein receptor
  KO
K12473  low-density lipoprotein receptor
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03272  Virion - Hepatitis viruses
oki04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03272 Virion - Hepatitis viruses
    109886714
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109886714
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oki04131]
    109886714
Membrane trafficking [BR:oki04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    109886714
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL DUF5050 EGF_3 EGF hEGF DUF1180 Gemini_mov TMEM154
Other DBs
NCBI-GeneID: 109886714
NCBI-ProteinID: XP_031655180
Ensembl: ENSOKIG00005021476
UniProt: A0A8C7HBW0
LinkDB
Position
LG20:complement(51612981..51632612)
AA seq 877 aa
MLPTRVGITGLTACCLVLLSHCFAPTDAAYTCGTSQFRCGNGKCITSRWVCDGGDDCGDR
TDELPAACEAKTCLPTEFSCGGPLNKCISGTWHCDGKADCDNGADEKGCAAKNCTDNEFR
CSNGQCIAVSFVCDKDNDCSDGSDETSCPTATCGPNAFQCNNTVCVPRLWACDGDADCAD
GSDEWPQNCGGRDTKPTTKPCGPHEFHCGSGECIHRSWSCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSRQCDRQLDCRDLSDEMDCKSVDACEGPNSFRCKSGECITVDKVC
NRQKDCRDMSDEPIRECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLGKDNRKCEDI
DECADPDTCTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTL
DRREYVPLIPRLKNVVALDMDMPGHKIFWSDLYHRKIYSADMNLAGNSSHHNVVIDSQME
SPECLAVDWIHGNIYWTDSVLQTISVATTDGTRRKTLISEGLEKPRSIVVDPANNFMYWT
DWGNEAKIEKSGLNGADRVALVTDNIMWPNGITLDMVNQRLYWVDSKMHTLSSIGVNGEG
RHTLIYNEDKLAHPLSLTVFEEKVFWTDMGDRAVMSANRLTGNDITVLAEDLMQPEDIIV
YHNLKQPIGKNWCTEKNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGLDMRKCVAA
PTTTAPSTTPKTAAPIPTRAPTKQPAGPTSTTTTTTSTTSSGRRAQPQDPDRSSTTHSPQ
ETAVTGQSGYVAMPKVAEASHHTVLYIVLPIMMMCLVLFGAVLLWRHWRLKNTNTIHFDN
PVYQKTTEDELHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq 2634 nt   +upstreamnt  +downstreamnt
atgctaccgactcgtgtgggaatcaccgggctgacagcatgttgcctggtgttgctctcc
cactgttttgctcctacagatgctgcgtatacatgtgggacaagtcagttcaggtgtggc
aacgggaaatgtatcaccagccggtgggtgtgtgacggaggtgatgactgtggtgacaga
actgacgagctgccagccgcctgcgaggctaagacctgcctgcccactgagttcagctgc
ggaggcccactgaacaagtgtatctccggaacgtggcactgtgatggcaaagctgactgt
gacaatggagctgatgagaagggctgtgccgcaaagaactgcaccgacaacgagttccgc
tgctccaacggtcagtgcatcgccgtctccttcgtgtgcgacaaggacaacgactgttcc
gatggttctgacgagacttcctgtcccaccgccacctgcggtcccaacgccttccagtgt
aacaacactgtgtgtgtcccgcgtctctgggcctgcgacggcgacgccgattgtgccgac
ggttcagacgagtggccccagaactgtggcgggagggacaccaaaccgacaacaaagccc
tgtgggccacatgaattccactgtgggagtggggagtgtatccataggagttggagctgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacttgc
cagccagatgagtttcagtgtaatgatggctcctgtatccatggtagccgtcagtgtgac
cggcagcttgactgcagggatctgagtgatgagatggactgcaagagcgtggatgcgtgt
gagggcccgaatagcttcaggtgtaagagtggggagtgcatcaccgtggacaaggtgtgc
aacagacagaaagactgccgagacatgtccgacgaacctatcagggagtgtggcaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtaccgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctggggaaggacaacaggaaatgtgaagacatt
gatgagtgtgctgacccagacacctgtacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggctatgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactctg
gaccgtagagagtacgtccctctcatccccagactgaagaacgtggtggccctggacatg
gacatgcctggacacaagatcttctggtctgacctgtaccacaggaagatctacagcgcc
gacatgaacttggcagggaactcctcccaccacaacgtggtgattgacagccagatggag
tcgccggagtgtctggccgtcgactggattcacggtaacatctattggacggacagtgtg
ctccagaccatctccgtggcaaccacggacggaacacggcgaaagacactgatcagcgaa
ggactggagaaaccaagaagcatcgtggtggacccagccaataacttcatgtactggact
gactggggcaacgaggccaagatcgagaagagtgggctgaacggagccgaccgcgtcgcc
ttggtaacggacaacatcatgtggcctaacggcatcactcttgacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccctctccagcatcggcgtaaacggagaagga
cgacacacactcatctacaacgaggacaagctggctcaccccctctctctcaccgtcttc
gaggagaaagtattctggaccgacatgggtgacagagcggtcatgagcgccaaccgcctg
acaggaaatgacatcactgtactggcggaggacctgatgcagccagaggacatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgcacagagaaaaactttgtgaat
ggaggttgtgagttcctatgtctacctgctccccagatcaaccaacactcccccaaatac
acctgtgcctgtcctgatcacatgaccctcggcctggacatgaggaagtgtgtggcagct
ccaacaactaccgctccctccaccactcccaaaactgcagctcccatccctaccagggcc
ccaaccaaacagccagccggccccacttccaccacaactacaactacctcaactacctcc
tccggccgccgggcccagcctcaggaccctgataggtcctcgaccactcacagtccacag
gaaactgcggtcacaggtcaaagtggctatgttgccatgcccaaagtagctgaggcatca
caccatactgtgctctacattgtcttacctatcatgatgatgtgcctggtgctgtttggt
gcagtgttgctatggagacactggaggctgaagaacaccaacaccatccactttgacaac
cccgtgtaccagaagaccacagaggacgagttgcacatctgtagaaaccacagccaggac
ggatacacctacccacagagacagatggtgagcctggaagaagacctggcatga

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