Oncorhynchus kisutch (coho salmon): 109886956
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Entry
109886956 CDS
T09179
Symbol
ddx58
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04622
RIG-I-like receptor signaling pathway
oki04623
Cytosolic DNA-sensing pathway
oki05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
109886956 (ddx58)
04623 Cytosolic DNA-sensing pathway
109886956 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109886956 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oki04054
]
109886956 (ddx58)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109886956 (ddx58)
Pattern recognition receptors [BR:
oki04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
109886956 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
PhoH
IstB_IS21
SNF2-rel_dom
AAA_19
ATP-synt_ab
FcoT
AAA_25
Motif
Other DBs
NCBI-GeneID:
109886956
NCBI-ProteinID:
XP_031647439
Ensembl:
ENSOKIG00005012333
LinkDB
All DBs
Position
LG16:2852082..2904778
Genome browser
AA seq
978 aa
AA seq
DB search
MYELEKSNLQRCSKYVIPILRPSYVKGFMTTYLQPEVSERILSEESKSVTAAAQVFLDQV
CLLDALGWYQALLDALEAEDYKGLCEALKGWDFQTLESTKLHRVLLDRIEPRFTKLIKPR
DLLLHLGDCLRKRECEEILAIENLKGPIAAAERLTDCLKRSDKQNWFKLLKSALYSCELT
EALQLLEPDTESSMSKMEVGDEEEGDTVMTVSFQYTEQSDDDDGMLMSGNPLTPSETPPT
SATGATSGVGEVQKGGEKRLREEEERGGGGGGGGEKSRGGEKKMREYQRELAEPVFQGKN
TVICAPTGCGKTVVALAICEQHLKVKGKGAKVVFMATKVDVFNQQYKLFQEHFQEKDPDI
RIDGLCGNQGDQLSMKVVMENNDIIVLTPQILVNAMAQGEVPSLSCFSLLILDECHNTTG
KHPYNIIMTSYLDAKLSTEQNGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSR
IISTIHTNTDELQSYVHTPDKEFFLVQKRHIDPFIRIIHDIMAKIEGLAKTVYNIESLSS
IENRDYGSQKYXQWIVDVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDA
RTKDALEYLSSFIQQVKNAGHDETERQLTAYFDGQQGVLRGLSSGGQKENPKLDMLQYIL
EEQYRQNDETKSVLFVRTRALADALKSWMEESDSLKFLKPGVLIGRGRKSSQLTGSGMTL
NSKKGVLDSFKSFDNQSKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQ
GSKCILVSDKKDRIDKEKHNMEKEKIVERAIRNLQDTPTEMLRKMEVFQRGDKVCRDMVK
MVPERPRTEGSYQLLCSKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFM
GLVKTRKLFCHCGLDWGIVASYLSIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMK
TFELTDIADSWNPLLDDQ
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagttggagaagagcaatctacagaggtgtagtaaatacgtgattcctattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcaaccagaggtttcagagagg
atcctatcagaggagagtaagtctgtgacggcagcagcccaggtgtttctagaccaggtg
tgtctcctggacgcactgggatggtaccaggccctgctagatgccctggaagcagaagac
tataagggtctgtgtgaggccctgaaggggtgggactttcagaccctggagagcactaag
ctacacagagtgcttctggaccggatagaaccccgcttcaccaaactgatcaaacccaga
gacctgctgctacacctgggagattgtctcagaaagagagagtgtgaagagatactggcg
atagagaacctgaaggggccaatagcagcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggcgctgtactcctgtgaactgact
gaggccctgcagctactggaacctgacacagagtcatccatgtcaaagatggaagtgggt
gatgaggaggagggtgataccgttatgactgtctccttccagtacactgagcagtctgac
gatgacgatgggatgctgatgagcggcaatcccttgacaccctctgaaaccccgcccacc
tctgcaacaggagccactagtggtgttggtgaagtccagaaaggaggagagaagaggctg
agagaggaggaggagagaggaggaggaggaggaggaggaggagaaaaaagtagaggagga
gagaagaaaatgagagagtatcagagagagctggctgaaccggtgtttcagggcaagaac
acggtcatctgtgccccaaccggctgtgggaagacggtggttgccctggcgatctgtgag
cagcacctgaaggttaagggtaaaggggcgaaggtcgtcttcatggcaaccaaggtggat
gtcttcaaccagcagtataaactgttccaggaacatttccaagagaaagaccctgacatc
aggatcgacggcctttgcggtaaccagggcgaccagctgtcgatgaaggtggtaatggag
aacaatgacatcatcgtcttaacccctcagatcctggtgaatgccatggcccaaggggag
gttccctctctctcttgcttctctctgttgattctagatgagtgtcacaacaccacaggg
aaacacccctataacatcatcatgacgtcatacctggatgccaagctcagcacggagcag
aacggacaacacctgccccagattgtgggtctgacggcctcagtggggattggctcgttc
aagaaccaatcagaggctgagaacaacatctgtcagctgtgtgccagtctggacagccgc
atcatctccaccatacacacaaacactgacgagctacagtcctacgtgcacacacctgac
aaagagttcttcctggtccagaagagacacatagaccctttcatcaggatcattcatgac
atcatggctaagatagaaggactggccaagactgtctacaacatagagtccttgtcatcc
atagagaatcgtgactacggcagtcagaagtatngacagtggatcgttgatgttcagaag
aaatgcagagttctacagctgaaagaccaggaggaggagagtagagtctgtagggctctg
tacaactacactgagcacctgaggaagtacaacgatgcgttgatcatcaacgaggatgcc
aggactaaggatgcgctagagtacctgtcatctttcatacagcaggtgaagaacgcaggt
cacgacgagacggagagacaactcaccgcttacttcgatggtcagcagggtgtactgcgg
ggtttgtccagcggggggcagaaggagaatcctaaattagacatgttacaatacatcctc
gaggaacagtatcgacagaatgatgagaccaagtctgtgctgttcgttaggacacgggcc
ctcgcagacgccttgaagagctggatggaggagtctgactctctgaagttcctgaaacca
ggagtactgattgggagaggacgcaagtccagccagctgactggctcaggcatgacgctg
aactctaagaaaggtgtgctggattcctttaagagttttgacaatcaaagcaagatcctg
atcgctacttcggtggccgacgagggcatcgatatcccacaatgcaacctggtattgatg
tacgaatacgttggcaatgtggtcaagatggtccaagtcagaggccgcggcagggcccag
ggcagcaagtgtatcttggtgtctgataaaaaggacaggattgataaagagaaacataac
atggagaaggagaagattgtagagagggccatcagaaacctacaggacacacctactgag
atgctccgcaagatggaggtgtttcagcgtggggacaaggtgtgtcgtgacatggtgaag
atggtaccagagagaccccggactgaaggcagctaccagctcctctgctccaagtgtaaa
aaacacagctgttacacagacgacatcagagtactgcaggattctcaccacatcgttttg
gaccccactctgttctctcgagctcgaactgaacctcaccctaaacccaaaggtttcatg
gggctggtgaagaccaggaagctgttctgtcactgtggactggactggggcatagtggcc
tcatacctgtccatacagaatctgcctgtgttaaagatagagagctttgtggtgaagaac
tgtgttaccgagcaacagaggtactacaggaaatggagagacgtgaccttttccatgaag
acctttgaacttacagacattgctgatagctggaatccattgcttgacgaccagtaa
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