Oncorhynchus kisutch (coho salmon): 109893212
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Entry
109893212 CDS
T09179
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oki04040
]
109893212
Ion channels [BR:
oki04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
109893212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
109893212
NCBI-ProteinID:
XP_020341915
Ensembl:
ENSOKIG00005012123
LinkDB
All DBs
Position
LG6:65460693..65501917
Genome browser
AA seq
1854 aa
AA seq
DB search
MPTRKITLLEAWERNRTFRRKKAKDLKICPRLLPLLRDPSVVASLTQQNAKMVALLPPTG
TDVFRHFTLESLVEIDRRMAEEAKEQGRQKTLNFEVAKQDLPKPAVDLETGKILPFIYGD
PPCELFNTPLEELDPFYKSHKTFIVITKRNTIFRFNAEPACYILTPFSILRRGSIKMLMH
SLFSMFIMLTVLSNCAFMTMSVPPAWSKTVGYVFTGIYTFEATIKVLSSGFCVGDFTYLR
DPWNWLDFILISMTYLTEFVDLGNVPVFRMFRVLRALKLITVIPGLKTIVGTLIMSVKKL
ADVMIITVFCLAVFAMIGLQMFMGILKQKCVHWPPGEWHFNSTYMGNITMANGFNDVMGY
NDMNTGNSTWDFKAYINDKANHYFLPGMLDPLLCGNVSDAGICPEGYTCMKAGGNPNYGY
TSYDNFGWAYLALIQLMTQDFWENLLQLTLRSAGKTYMIFFVVVIFLCSFYLINLILAVV
AIAHAEQNEATRAEAKEKEEEYAMIMVQLKERREAEVKERASRPKGSKDQLEVAGLQKKT
PSSPSVYSQDAMDDLEEELRPCPPCWYKCSDVFLKWNCCVPWVTFKKWVHFIVMDPFMDL
VITICIVLNIMFLAMEHYPMSIGFEEVLSVGNLVFIGIFTAEMVLKLIAMDPYYYFQVGG
NIFDSIIVAISLMELWLADVEGLSVLRSFRLMRVFKQAKSWPTLSMTIKIIGNSVGTLVN
ITLVLAIIIFMFAVGGMQLFGKSYKECVCKISLDCMLPRWHMDDFFHALLIIFRALCGEW
IETMWDCMEVAGQGICLVFFMMVMVIGKLVVLNLFLTFLLSSFSRYNLAAPEEDGEMNNL
QIATSRITRGMDWAKAYIIKQFCIIIGNQPKEDGDGADGNGGSNGDVDGLPKDSLALKNI
NSSDNPKADLELKMLDDVNPSGFLANANLTLNVPIAKMESDDDEDDSSDVKGKGTNEDAK
RRKPIAQDNASLICRTSVEVEKEEANPTSPENCWTATCIGRCPCLDCDITTGKGKTWWNF
RKTCFLIVEHNYFQSFIIFMILMSSGALAFEDIHIEQRRTIKVILEYADQVFTYVFIIEM
LLKWVAYGFQAYFTNAWCWLDFLIVNVSMIGLTANILGYAELGSIKSLRKLRALRPLRAL
SRFEGMKVVVNALVGAIPSLVNVLLVCVTFWLIFSIIGVNLFAGKYYYCFNTTSEEMFSA
DIVNNRSECVQLIEGNADVRWMNSKINFDNVAIGYLSLLQVATFKGWLGILYGAVDSRMV
GEQPMYEDNVYMSIYFVMFIIFGTFVMLNLFIGVIIDNFNQQKKKFGGKNIFMTEEQNKY
YNAMKKLGSKKLQKPIPRPKNKFAGIIYDLITQQFFEVFIIVLICLSMVTMMVDTDDQSE
EKDSILFFINLVFIFIFIAECILKLIGLRQYYFTVGWNILDFVVVILSILGLLLADLIEK
YFVSPTLFRVVRLARIGRVLRLIRGAQGIRTLLFSLRMSLPAIFNIGLLFFLIMFIFSIF
GMSNFAYVKKESGIDDMINFETFGNSIICLFMITTLAGWDSVLSPMMSSTPPNCDPYIEN
PGTNVRGNCSSPGWGILFICSYIIMCFFLVVNMYIAVILENFNVVIEESGNPLCEEDFEM
FYETWEKFDPDASQFIAYNILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDI
LLALTTEVLGESGEMDAMKESMEEKFMAKKPFKVSFKPITTTLRRKQEEVAAVVIQRAYC
KHLLRSSMKLASHKYHEKKELTKEDEAPPEQEGMIAIRMSKLYESQQSLGVDETVVDMDS
YVKLERKELTATQPPVVTTETPPHVELQNEIISHSAPFVIPASTHNSQLKESHV
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccgaaagataactctgctggaagcctgggagagaaacaggacctttcggagg
aagaaagctaaagacctgaaaatatgtcctcgtctactcccactgctgagagaccccagt
gtggttgcatccctcacccagcagaatgccaagatggtcgccctgctccctcccacaggc
accgatgtgttccgccacttcacccttgagtcgctggtggagattgataggcggatggcc
gaggaagcaaaggagcaggggagacaaaagaccctgaactttgaggtggcaaagcaggac
ctgccaaagccagccgtcgacctggagaccggcaagatcctgccgttcatctacggagac
ccaccatgtgagctgttcaacacacccctggaggaactggatcctttctacaaatcacac
aaaacctttattgtcatcaccaaaaggaatacaatcttcagattcaatgctgagcctgcc
tgctacattctgactcccttcagtattctcaggagaggatccatcaaaatgctcatgcat
tcattgtttagcatgttcatcatgttgacagtcctgtccaactgtgcgtttatgacgatg
agtgtccctccggcatggagtaaaactgttggatatgttttcactggtatctataccttt
gaggcaacaattaaagtgttgtccagtggcttctgtgttggagatttcacataccttcga
gatccatggaactggctggatttcattttgatcagcatgacgtacctcacagagtttgtt
gacctgggcaacgtgcctgtcttcaggatgttccgtgtactccgagcccttaaactaatc
actgtaattcccggtctgaaaaccattgtgggcactctgatcatgtcagtgaagaagctg
gctgatgtgatgatcataacagtgttctgcctggctgtgttcgctatgatcggcctgcaa
atgttcatgggaatcctgaagcagaagtgtgttcactggccccctggtgaatggcatttc
aactccacctacatgggcaacatcactatggctaatggttttaatgatgttatgggctac
aatgacatgaacaccggcaacagcacatgggacttcaaggcatacatcaacgataaagca
aaccattacttccttcctggaatgttagaccctcttctttgtggaaacgtttctgatgct
ggaatatgtcctgaaggatacacgtgtatgaaggccggagggaatcccaactatggatac
acaagctacgacaattttggatgggcctaccttgccctaattcagctcatgacacaggac
ttctgggaaaatctactccagctgactcttcgctctgcagggaaaacctacatgattttc
tttgtggtggtgatcttcctgtgctcgttctacctgatcaacctgatcctagctgtggtg
gccatagcgcatgctgagcagaacgaggccaccagggccgaggccaaggagaaggaggag
gagtatgccatgatcatggtgcagctgaaggaaaggagagaagcggaggtcaaagagagg
gccagtagacccaaggggagtaaggaccagctggaagtagcaggccttcagaagaagaca
cccagttcacccagtgtctacagccaagatgccatggacgatttggaggaggaactgagg
ccttgtcctccttgctggtacaagtgttcagacgtcttcctgaaatggaactgctgtgtg
ccctgggtgactttcaagaagtgggtgcacttcatagtgatggacccattcatggacttg
gtcatcaccatctgcattgtactcaacatcatgttcttggccatggagcactaccccatg
tcaataggttttgaagaagtgctgagtgtggggaacttggtcttcataggaatcttcaca
gcagagatggtgctgaagctcatcgccatggatccgtactactacttccaggtcgggggg
aacatcttcgacagcatcattgtggcaatcagcctgatggagctgtggctggccgacgtc
gagggtctttccgtgcttcgctccttccgtctgatgcgtgttttcaagcaggccaaatcc
tggcccacactcagcatgacaatcaagatcatcggtaattcagtgggcaccctagttaac
atcactctggttctggccatcatcatcttcatgtttgccgtggggggcatgcagctcttc
ggcaagagctacaaagagtgtgtctgcaagatctccttggactgcatgctgcctcgctgg
cacatggatgacttcttccacgctcttctcatcatcttccgggcgctgtgcggagagtgg
atcgagaccatgtgggattgcatggaggtggccggacagggcatttgtctcgtcttcttc
atgatggtcatggtcatcggtaaactagtggtgttgaacctcttcttgacctttctgctg
agctcgttcagccgttacaacctggcggctccagaggaggacggggagatgaacaacctg
cagatcgccaccagcaggattaccaggggcatggactgggccaaggcatacatcatcaag
cagttctgcattatcataggcaaccagcctaaggaggatggagatggggctgacggtaat
gggggtagtaatggggatgtggacggcctcccaaaggacagcttggctttgaaaaatata
aattccagtgacaacccaaaggctgatttggagctcaaaatgctggacgatgttaaccca
agtggatttcttgcaaatgcgaatttgaccctgaatgtacctattgccaaaatggagtct
gatgatgatgaggatgacagttctgacgtgaaaggaaaaggcacaaatgaggatgctaag
cgaaggaaacctattgcacaggacaatgcctctttgatctgcaggacaagtgtggaagtg
gagaaagaagaggcaaaccccaccagccctgagaactgctggactgcgacatgtattgga
cgatgcccttgccttgattgtgacatcaccacagggaaaggaaaaacttggtggaacttc
aggaagacatgcttcctcattgtggaacacaactactttcagtcctttatcatcttcatg
atcctaatgagtagtggagctttggcttttgaagacatacacattgaacagcgcaggact
ataaaagtcatcctggaatatgctgatcaagtcttcacctacgtgttcattattgagatg
ctcttgaagtgggtggcttacggattccaggcctacttcacaaatgcatggtgctggctg
gacttcctcattgtgaatgtgtctatgattggtttaacggctaacatcctgggctacgct
gaacttgggtcaatcaaatctcttcgaaagttacgggctttgcggcccctccgtgccctg
tccagatttgagggaatgaaggtggtggtgaacgctctggtgggggccattccttccctt
gtcaatgtgcttctagtgtgcgtcaccttctggctcatcttcagcatcattggagtcaac
ctgtttgctgggaagtactactactgcttcaataccacgtctgaggagatgttctctgct
gacattgtgaacaacaggtccgaatgcgtccaactaatagagggtaatgccgacgtacgc
tggatgaactcaaagatcaactttgacaacgtggccataggctacctttccctcctgcaa
gtagcaacatttaaaggatggctgggtatattgtatggcgctgtggattcacgtatggtg
ggagagcaacccatgtatgaggataatgtttacatgtccatctactttgtcatgttcatc
atctttgggaccttcgtcatgctgaatctcttcattggtgtcattatcgacaacttcaac
cagcaaaaaaagaagtttggagggaaaaatattttcatgacagaggaacagaataaatac
tacaatgccatgaaaaagcttggttccaagaagctacagaaacccattcctagacccaag
aacaaattcgcaggcattatttatgacctgatcacccaacaattcttcgaggtcttcatt
attgtgctgatctgcctcagcatggtaacgatgatggtggacacggatgaccagagcgag
gagaaggatagcatcctcttcttcatcaacctggtgtttatcttcatcttcatcgcagag
tgtatcctcaagttgatcggattgcggcaatattattttaccgtcggatggaatatttta
gattttgtcgtcgtcattctctccatccttggtttactgctggcggacctcatagagaag
tattttgtctcacctacccttttccgtgtcgtaagactggccaggattggtcgagttctg
agactcatccgaggagctcaaggcatccggacactgttgttttccctgaggatgtcactt
ccagctatcttcaacattgggctcctgttcttcctcatcatgtttatcttctccattttt
ggaatgtccaactttgcgtatgtcaaaaaggagtccggaatagacgatatgatcaatttt
gaaacttttggcaacagtatcatttgtctgttcatgatcacaaccttagccggttgggac
agtgtcctctcacccatgatgagtagtacacctccgaactgtgacccgtacattgaaaat
ccaggcacaaatgtaagaggcaactgcagcagccctggttggggaattctttttatctgc
agctacatcatcatgtgtttctttcttgtggtcaacatgtacattgccgttattctcgag
aacttcaatgttgtcatcgaggagagcggcaacccgctgtgtgaggaagactttgagatg
ttctatgagacctgggagaagttcgaccctgacgcgtcacaattcatcgcctacaacatt
ttgtcggagttctgtgacacgcttaaagacccgctcaggatccccaaacccaacgcaatc
aagctgatcaccatggaccttcccattgtccctggggataagatccactgtctggacatc
ctgctggctctgaccacagaggtgctgggagaatcaggggagatggatgccatgaaggag
agcatggaggagaagttcatggccaaaaaaccctttaaagtgtcattcaagccaatcacc
accaccctgaggcgaaagcaggaggaggtagcagctgttgttattcagagagcctattgt
aagcatctgctgagaagttcgatgaaactcgcttcccacaagtaccatgagaagaaagag
ttaaccaaggaggacgaagcgccgccagagcaggaaggaatgattgccatcagaatgagc
aaactgtatgaaagccaacaatcactcggggtggatgaaaccgttgtagatatggattct
tatgtaaaactggagagaaaagaactgacagcgacacaacctcctgtggtgactactgaa
acgccgccgcatgtggagcttcagaacgagatcatctcgcactctgccccctttgtcatc
ccggcctcaacccataactcacagctgaaagagtcccatgtttga
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