Oncorhynchus kisutch (coho salmon): 109893294
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Entry
109893294 CDS
T09179
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109893294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109893294
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109893294
Complex C
U5 SnRNP specific factors
109893294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
109893294
NCBI-ProteinID:
XP_020342047
Ensembl:
ENSOKIG00005021090
UniProt:
A0A8C7GY99
LinkDB
All DBs
Position
LG6:complement(69077124..69095171)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLETDDRDADEADEDEDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTSGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGDINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIIQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattggtccagaactagactctgac
gaggatgatgatctggagacagacgacagagatgcggatgaggctgatgaggatgaggat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaatgtcaccctgtgtggccacctgcaccacggcaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctgttcactgaacaggagcgaggggttggtatcaag
agcacccctgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgacatcaggcatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggggtgatgttaaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaataaggtggaccgc
ctcatcgtggagctcaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagacgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgtgtttgcttcaccctgggctca
ttcgccaagatctactccgacacctacggtgacatcaactacacagagtttgccaagagg
ctgtggggagacatttatttcaaccccaaaacgcgcaggttcactaagaaagcccccacc
agtaactcccagcgtagctttgtggagtttgtgttggagcctctgtacaagatcctatct
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagttggggatccac
ctggtcaaagaggagctgaagctcaacatcagacctctactcaggctggtctgtaagcgc
ttcttcggagagttcactggctttgtggacatgtgcgtgcagcacatcccctcaccacag
gggggtgccaagaacaagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgtgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccacgcgttcggccgggtgctgagtggtaccatccag
gcgggccagccagtcaaggtgctgggcgagaactacactcttgaggacgaggaggactcg
caggtctgcacggtgggacgcctctggatcaacgtcgccaggtaccagatagaggtgaac
cgtgtgcctgctggcaactgggttctcattgagggctgtgaccagcccatcgtcaagaca
gccaccatcaccgagcccagagggaacgaggaagcccagatcttccggccgctcaagttc
aacacggcgtcggttatcaagatcgctgtggaaccagtcaacccgtcagagctgcccaag
atgttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgttatcctgggtactggggaactctacctggactgtgtcatgcac
gacctgcggaaaatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcctgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcatccagggcttccagtggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccatcgactcgtttggc
ttcgagactgacctgagaacacacacacagggacaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcattgtgatcaggccgctggag
ccccagcctgcccctcacctggcaagagagttcatgatcaagacccgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttctttgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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