Oryzias latipes (Japanese medaka): 100302438 Help Entry 100302438         CDS       T02443                                  Name (RefSeq) thrombospondin-1a precursor   KO K16857   thrombospondin 1 Organism ola  Oryzias latipes (Japanese medaka) Pathway ola04115   p53 signaling pathway ola04145   Phagosome ola04148   Efferocytosis ola04350   TGF-beta signaling pathway ola04510   Focal adhesion ola04512   ECM-receptor interaction ola04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ola00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     100302438   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100302438  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     100302438    04148 Efferocytosis     100302438   09143 Cell growth and death    04115 p53 signaling pathway     100302438   09144 Cellular community - eukaryotes    04510 Focal adhesion     100302438   09142 Cell motility    04820 Cytoskeleton in muscle cells     100302438  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ola04131]     100302438   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ola00536]     100302438 Membrane trafficking [BR:ola04131]  Endocytosis   Phagocytosis    Opsonins     100302438 Glycosaminoglycan binding proteins [BR:ola00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100302438 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF Laminin_G_3 EGF TSP1_CCN Laminin_G_1 Laminin_G_2 Motif Other DBs NCBI-GeneID:  100302438 NCBI-ProteinID:  NP_001156590 UniProt:  C5HIF5 LinkDB All DBs Position 24:complement(19813287..19825081) Genome browser AA seq 1186 aa AA seqDB search MTRASTVLLLMLCSCEAARVAESRDDNSVYDLFELIRVPNKNHGVTLVKGDDPYSPAYKI VNPDLIPPLPDGAFRDLIDSIHAERGFLLLLNFKQFKRTRGSILTVEKRDGSGPVLEIVS NGKANTLDIVYSTENKQQVVSIEEVDLATGHWKNITLFVQEERAQLYVGCEEVNTAELDA PIHSILTQETPPDIDSLESQTKLCFQGVLQNVRFVFGTTLEAILRNKGCQSSTSDTMILK NLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSNELRQLTDENK LIKTRIGIHRGVCIHNGIVRKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANATVPD GECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTRDCY LQECDKRFKQDGSWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQLGGKQCEGEARQTQKC QKSPCPINGNWGPWSPWDLCTLTCGGGVQTRKRLCNNPAPLYGGKECVGEATDRQMCNKK ACPVDGCLSNPCFSGAKCTSFPDGSWKCGKCPNGYSGNGINCKDIDECKEVPDACFEFNG VHRCENTDPGYNCLPCPPRYTGPQPYGQGIEEAAANKQVCTPRNPCLDGSHDCNKNARCN YLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNLPNS GQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDEVGDRCDNCPYNSNPD QADTDNNGEGDACAVDIDGDGILNEKDNCPHVYNVDQRDTDLDGVGDMCDNCPLEHNPDQ VDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYISNANQVDHDKDGKGDACDHDDDNDGIP DDKDNCRLAFNPDQLDSDGDGRGDACKEDFDLDNVPDIYDVCPENFDISETDFRKFQMVP LDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDDYAG FVFGYQSSSRFYVVMWKQITQTYWSHKPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTG NTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKMMADSGSIYDKTYA GGRLGLFVFSQEMVYFSDLKYECRGMFNILPNTPKELPQMTQNTNY NT seq 3561 nt NT seq  +upstreamnt  +downstreamnt atgacgcgcgcaagcaccgtgctgctgctgatgctctgctcctgtgaggctgcgagggtc gcagagagccgagatgacaacagcgtgtatgacctgttcgagctcatccgcgtccccaac aagaaccacggggtgactctggtgaagggagacgacccgtacagtcccgcctacaagatc gtcaacccggacctgatccccccgctccccgacggtgcctttcgggacctgatcgactcc atccacgcagagagaggattcctgctgctgctcaattttaagcagttcaagcggaccaga ggcagcatcctgactgtggagaaacgcgacggctccggaccggtgctcgagatcgtctcc aatggcaaagcgaacaccttggacatcgtctactccacggagaacaagcagcaggtggtc tccatcgaggaggtggacctggccacgggccactggaagaacatcacgctgttcgtgcag gaggagcgcgcgcagctgtacgtagggtgcgaggaggtgaacaccgccgagctggacgca ccgatccacagcattctgacgcaggagaccccgccggatattgattccctggagtctcaa actaagctgtgtttccagggggttcttcagaacgtgcgcttcgtgtttggcaccacactg gaagccatcctgcgcaacaaaggctgccaaagctctacaagtgacaccatgatcctgaag aatctcaacggttcctcagccatcagaactgagtacaccggacataaaaccaaagacctt cagatggtctgtggcttctcctgcgaggacctgatcagcatgttcaaggagctgaagggt cttggtgtggtggtcaaggagctgtccaatgaactccgtcaactgacagacgagaacaag ctgatcaagacccggatcggcatccacagaggtgtttgtatccataacggcattgttcgc aaaaaccgagacgagtggactgtggacgactgcaccgagtgcacgtgtcagaactccgcc actgtgtgccgtaaaatctcctgccccttgatcccctgtgccaatgctacggtccccgat ggggagtgctgcccccgctgtggaacaccaagcgattacgcagaggacggctggtcgcct tggtctgaatggactcattgttctgtgtcgtgtgggcggggcattcagcagcggggacgc tcctgcgatcgcatcaacaacaactgcgagggcacctctgtgcagacccgcgactgctac ctccaggagtgtgacaagcgcttcaagcaggatggcagctggagccactggtcaccctgg tcatcctgttctgtcacctgtggcgaaggagttatcacccgtatccgcctctgcaactct cccactcctcagttgggaggaaagcagtgtgagggagaagctcggcaaacccagaagtgc cagaagtctccatgtcccatcaatggaaactggggaccctggtctccgtgggatttgtgc actctcacctgtggagggggtgttcagactcgtaagcgcctgtgcaacaatcctgctcct ctttatggtggtaaggagtgcgtcggtgaggctacagacagacagatgtgcaacaagaaa gcctgtcctgttgatggttgcttgtccaacccctgcttttctggagccaagtgcacaagt ttccctgatggctcgtggaagtgtggaaagtgtcccaacggttactctggcaatggcatc aactgcaaagatatcgacgagtgtaaggaggttccagatgcttgctttgagttcaacggc gtgcaccgttgtgagaatacagatccaggctacaactgtttgccctgccctcctcgctac acaggaccccagccgtatgggcaaggcatagaagaagctgctgccaacaaacaggtgtgt acaccccgtaatccctgcctggatggaagtcacgactgcaacaaaaacgcccgctgcaac tacctcggccacttctcagaccccatgttccgttgcgagtgcaagcctggctttgccgga aacggacacatctgtggagaagacacagacctggatggatggcccaatgctgacctggtg tgtgtggagaacgccacctaccactgtaaaaaggacaactgtcccaaccttcccaactcg gggcaagaagattacgataaagatggaattggagatgcttgcgatgacgacgacgacaac gacggcatccccgatgacagggataactgtccgttcgtgtacaatcccaggcagtatgac tatgaccgcgatgaagtgggcgaccgctgtgacaactgcccttataacagcaaccctgac caagcagacacggacaacaacggcgagggcgacgcttgtgcagtggacattgatggagat ggaattctgaatgagaaggacaactgtccccacgtgtacaacgttgaccagagagacacg gatttggacggagtgggagacatgtgtgataactgccctctggagcataatcccgatcag gtggactcagatgatgatcgtgtgggagataagtgtgacagtaaccaggacattgacgag gatggacaccagaacaacttggacaactgcccatacatctcaaatgccaaccaagtcgac catgacaaagatggcaagggagatgcctgcgaccatgatgacgacaacgatggcatccct gatgacaaagacaactgcagactggcttttaacccagaccagctggactctgatggtgac ggccgtggagacgcttgcaaagaagactttgatctagacaacgtgcctgacatctatgac gtgtgtccggagaactttgacatcagtgagacggacttccgtaaattccagatggttcca ctggatccgaaaggaacatcccagatcgatccgaactgggttgtccgacatcaaggcaag gagctggttcagactgtcaactgtgaccctggcattgctgttggttaccacgagttcaac tcagtggacttcagtggaactttctttattaacacggaacgagatgatgactatgctggt ttcgtattcggttaccagtcgagttccaggttctacgtggtgatgtggaaacagatcacg cagacctactggtcccataaacccacaaaagctcagggctactctggcttgtccatcaaa gtggttaattctactaccggtccaggggagcatctcaggaatgccttgtggcacacaggc aacaccccaggacaggtccgcacactgtggcatgacccgaagaacgttggatggaaggac ttcactgcctacagatggcacctgatccaccgaccaagaacaggactcattcgagttgta atgtatgaaggaaaaaagatgatggcggactctggaagcatctatgacaagacgtacgct ggcggcaggctaggtctctttgtcttttctcaggagatggtctatttctctgacctgaag tatgaatgcagaggtatgtttaacatattacctaacactcctaaagagttgccccagatg acgcaaaatacaaattattga

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