Oryzias latipes (Japanese medaka): 101155039
Help
Entry
101155039 CDS
T02443
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04010
MAPK signaling pathway
ola04020
Calcium signaling pathway
ola04510
Focal adhesion
ola04540
Gap junction
ola04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
101155039 (pdgfrb)
04020 Calcium signaling pathway
101155039 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101155039 (pdgfrb)
04540 Gap junction
101155039 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
101155039 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ola01001
]
101155039 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ola04090
]
101155039 (pdgfrb)
Enzymes [BR:
ola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
101155039 (pdgfrb)
Protein kinases [BR:
ola01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
101155039 (pdgfrb)
CD molecules [BR:
ola04090
]
Proteins
101155039 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
Ig_6
VEGFR1-3_N_Ig-like
Adeno_E3_CR1
C2-set_2
VEGFR-1-like_Ig-like
Ig_VEGFR-1-like_5th
RIFIN
ICAM_N
PKD
Motif
Other DBs
NCBI-GeneID:
101155039
NCBI-ProteinID:
XP_011478536
UniProt:
H2LJ41
LinkDB
All DBs
Position
10:16257638..16283252
Genome browser
AA seq
1112 aa
AA seq
DB search
MGSKAFTMRRLTTRQLTVIFTAWLYFCSGARCLEVTPDEKEIVLAKGSELTLTCSGLMET
TWEYKKDDVPYFQVEKDQESHQSYQSVNSGVFSSVLTLLKVSWQHTGVYQCINRHTKETK
EVAVFVADPEVWFVRSDHGMVPKSEETIIPCMVTNPNISVTLHEKSSHSPINGLYVPTEG
FKAPLEARTYFCRGKLNGKVKDSQDFHVFSIFVQETFETYVNASKTVLKQGEPLTVNCTV
HGVELVNFSWDTPSGELEEVDPLTEFLSSITMRSYLMFPGTTVAHSGTYVCHAHELVQDQ
EASASIDITVFEKGFVDVKPAQSKNISTKVQENVELRVEITAYPPPQILWAKDGATIKGD
KSITIRQVNEIRYVTILTLVRVRMEQKGLYTVLIRNGDDSKEVAFDLEVHVPSQIKDLSD
HHLPANRHLVTCTAEGVPTPTIQWYSCDSMLKCSNQTSAWQPLVPHSEELSIQTNVSYSQ
ARKLSRVRSQVTFLKPQQVTVRCETTNQAGLTDRRDIKLVSSTLFSQVTVLAAVLALVVI
IIMSIIILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMRRDNLVLGR
TLGSGAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNI
VNLLGACTKHGPLYLVTEYCRYGDLVDYLHRNKHTFLQYYAEKNQYDDCLISRGSTPLSQ
RKGYVSFGSESDGGYMDMSKDEPSIYVPMQEQIDTIKYADIQPSPYESPYQQDLYQDQGS
TSLDLVISDCASLTYEDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDF
GLARDIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYP
DLPMNELFYNALKRGYRMAKPPHASDEVYEIMKKCWDEKFEKRPEFSLLVHNVGNMLTDS
YKKRYSQVNENFLKSDHPAVARTKPRRTSPFPVADPTFGSLSPVAFSSSPGPTANNQSQR
PGERRHEADGQEVVTSYNEYIIPIPDPKPEEAFGSMPSESPESSLAAEEEETDSMSQDTA
ETLPEDERLEDTSERDALLGSSATPEVEDSFL
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaaaggcgttcactatgaggcggctgaccacacgccagctgacagttatattt
acagcctggctgtatttctgctctggagcgcgctgtctggaggtcacacctgatgaaaaa
gagatcgtcctggctaaaggctctgagctaacgctcacgtgctccggcttaatggagaca
acctgggagtataagaaggacgacgtaccctactttcaggttgagaaagatcaagaaagt
catcaaagctatcagagtgtaaatagcggcgtgttctccagtgttctcaccctgctaaaa
gtgagctggcagcacactggggtgtatcagtgcattaatcggcacactaaggaaaccaag
gaggtggctgtgtttgttgcagaccctgaggtgtggtttgtgaggagtgaccacggcatg
gtacccaaaagtgaggaaaccatcatcccatgcatggtcaccaacccaaacatcagcgtc
acgctgcatgagaaaagctctcactcgcccatcaacgggctgtatgttcccactgagggg
ttcaaagcacccctggaggcaaggacatatttctgtcgtggcaagctgaacggcaaggtg
aaagactctcaagacttccatgtcttcagcatttttgtccaagagacctttgaaacctat
gtcaacgcttcaaagacggtcctgaagcagggagagcctctgactgtaaactgcaccgtg
cacggggttgaactggtgaatttttcctgggatactcccagcggtgagctcgaggaagtt
gatcccctgactgaatttctgtcatccataaccatgcgctcctacctgatgttccctggc
accacggtggcgcacagtggaacctatgtatgccatgctcacgaactcgttcaagaccag
gaggccagcgccagcatcgacatcacagtctttgaaaaaggttttgtggatgtgaagcca
gctcagtcaaaaaacatttccaccaaagtacaggagaatgtcgaactgcgagtggaaatc
actgcctacccgcctcctcagattctgtgggccaaagatggcgccaccatcaaaggagac
aaaagcatcaccattagacaagtgaatgagatcaggtacgtcaccattctcacgttggtg
agggtgaggatggagcagaaaggactctacactgtcctcattagaaatggggatgactca
aaggaagtggcctttgacctggaagtacatgttccctctcagattaaagatctgtctgat
caccacctgccagcgaacagacacttggtgacctgcaccgcagagggggtcccaactccg
accatacagtggtacagctgtgacagcatgctgaagtgtagtaaccaaacatcagcatgg
cagccgctggtcccacattcagaggagctgagcatccagaccaatgtgagctacagccag
gcacgaaaactgagtcgagtgcgcagccaagtgaccttcctcaagccccagcaggtcaca
gttcgctgtgagaccaccaaccaagccggactcaccgaccggagagacatcaaactggtg
tctagcacactcttctcccaggtgactgtattagctgctgttttggcattagtggtcatc
attattatgtccatcatcatcctcattgctgtatggaggaagaaacctcgctatgaaatc
agatggaaagtcattgaatctgtgagtcaggatggccacgagtacatctatgtggatccc
atccacctgccctatgacctggcctgggaaatgcgcagagacaacctggttctgggtcgc
actcttggatcaggagcgtttggcagggtggtcgaggcaaccgcatacggtctcacgcac
tcccagtccagcacaaaggtggcagtgaaaatgctgaaatccactgctaggaggagtgag
actcaggctctcatgtcagaactgaagatcatgagccaccttggtcctcatctcaacatt
gtcaacttgctcggagcttgtaccaaacatggccctctctatctggtgaccgagtactgt
cgctatggtgatttggtggattacctgcacaggaacaaacacaccttcctgcagtactac
gccgagaagaaccagtacgacgactgcctcatttctagaggaagcacccctctcagtcag
agaaaaggctatgtgtccttcggcagtgagagcgatggaggctacatggacatgagcaaa
gatgagccgtcaatctacgtgcccatgcaggagcagatagacaccatcaaatatgctgac
atccagccttctccatacgagtccccctaccagcaggacctctaccaagatcaaggaagc
accagcctggacttagtgatcagtgattgtgccagcctcacctatgaagaccttctaggt
ttcagctatcaggtggcaaaggggatggagtttctcgcctccaaaaattgcgtccatcgt
gacctggctgccaggaacgtgttgatctgtgaaggcaagctggtgaagatttgcgacttt
ggcctggccagagacataatgcatgattccaattacatctccaaaggaagcaccttcctg
cccctgaagtggatggcaccagaaagcatttttcataatttgtacaccaccctgagtgat
gtgtggtcatacggcatactcctttgggaaattttcactctgggaggaaccccctaccca
gatttgcccatgaacgaactgttctacaacgcactgaaaagaggataccgcatggccaaa
cctccccatgcttcagatgaagtgtatgaaatcatgaagaagtgctgggatgaaaagttt
gagaagaggcctgagttctccttgttggttcacaacgtgggaaacatgctgacagacagc
tataagaagagatacagccaagtgaacgagaacttcctgaagagtgaccacccggcagtg
gcccgcaccaaaccccgccggacctcgccctttcccgtcgctgaccccacatttggctcc
ctgtctcctgttgccttctcctcctctcccggtcccacagccaacaaccagagccagagg
cctggagagcgcaggcacgaagcagacgggcaggaagtcgtaacttcatataatgagtac
atcattcccatcccggaccccaaaccagaggaagctttcggcagcatgccgtcagaaagc
cctgaaagctctctggctgcagaggaagaggagactgactccatgtcgcaggacacagct
gagactcttccagaggatgagcgcctggaggacaccagcgaaagggatgctttgctgggc
tcctcggcgacccccgaggtagaagacagcttcctgtag
DBGET
integrated database retrieval system
