Oryzias latipes (Japanese medaka): 101155844
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Entry
101155844 CDS
T02443
Symbol
tdg
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101155844 (tdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101155844 (tdg)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
101155844 (tdg)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
101155844 (tdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Ribosomal_L19e
Motif
Other DBs
NCBI-GeneID:
101155844
NCBI-ProteinID:
XP_023811360
UniProt:
A0A3B3HHV9
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Position
6:complement(8159964..8167260)
Genome browser
AA seq
457 aa
AA seq
DB search
MEEKMNGSLPVVSPEYLHQWVQSAQQFQALQAQYSNFNPNYQFSHPESRTAEPAAAHMAN
PDGMTDPMEPANLVKPPAKKRGRAAQPKEPRPPKPPKVPKAPKPPKAPKPPKDPNAPKAK
PGPKPKKSAGAQADGKQEKIDESFKKVKRKVDRFKGMSEEEVMKKTLPDLLDHNLDYVII
GINPGLMAAYIGRWFPGPGNHFWKCLFLSGFTEDQLNHMHDTTLPVKYKMGFTNMVARAT
PGSKDLSSKELREGGKILVEKLKKYKPLIAVFNGKCIYEMFCRELFGKKPQKLEFGLQPH
KIPDCDVALFLMPSSSARCAQFPRAQDKVHFYIKLRELRDQLKGVRRNTEIEEVDYSFDL
QLAKEDAKRLAIKEEQYDPGYEDAYGGAYVEKTAEEGQAEGQSNGHCSFSSAENKEGAQE
AATSHTAEGQLPDGQWMTQSFADHIPDISGGPKQGSA
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagatgaatggatctctgcctgttgtctccccggagtatcttcaccagtgg
gttcagtctgcccagcagttccaggctctccaggcccagtactccaacttcaaccccaac
taccagttttcccacccagagagtcggactgcagagccagccgcggcccacatggccaac
ccagacggcatgacggatccgatggaacctgcaaatctagttaaacctccagccaagaaa
agaggcagagcagcccagcccaaggaaccacgtccacccaagccacccaaagtccccaag
gcgccaaaaccacccaaggcgccaaaaccacccaaggatccaaatgcccctaaagcaaaa
cctggtccaaagcccaaaaaatccgccggtgctcaagctgacggaaaacaggagaagatt
gacgagagcttcaagaaggtgaagaggaaagtggaccgctttaaagggatgtcagaggag
gaggtcatgaaaaagactcttccagacctactggaccacaacctggactacgtcattatt
ggtatcaatccagggctgatggcagcttatatcgggcgttggtttccgggtcctgggaat
catttttggaaatgcctgtttctatctgggtttactgaggatcaacttaaccacatgcac
gacacaactctgcctgtgaagtacaaaatgggcttcaccaacatggtcgccagggcaaca
ccagggagcaaagacctgtcaagcaaggagttgcgtgaaggaggcaaaattctagtagag
aagctgaaaaaatacaagcccctcatagctgtgttcaatggaaaatgtatctatgaaatg
ttctgcagggagctgtttggaaagaaacctcaaaagctggagtttggtttgcagccacac
aagatacccgactgtgatgtggcgctgtttctgatgccatcatccagtgcacgctgtgcc
cagtttccacgtgctcaagacaaagttcacttttacatcaaactcagggagctaagagac
cagctgaagggcgttcgaagaaacactgagattgaggaggttgactactcttttgacctc
cagttggctaaagaggatgccaagaggctggcaataaaggaggagcagtatgatcctggt
tatgaagatgcctatggcggagcatatgtggagaagacagccgaagagggccaggcggaa
ggccagagcaacggtcactgttcattctcatctgctgaaaacaaagagggagcacaggaa
gcagccacgtcacacactgcagagggccagcttccagacggacagtggatgacccagtcc
ttcgcagatcatattccagacatcagcggtggaccaaaacaaggcagcgcgtga
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