Oryzias latipes (Japanese medaka): 101157862
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Entry
101157862 CDS
T02443
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101157862 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ola03041
]
101157862 (eftud2)
Spliceosome [BR:
ola03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101157862 (eftud2)
Complex C
U5 SnRNP specific factors
101157862 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
101157862
NCBI-ProteinID:
XP_004071318
UniProt:
H2LD77
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All DBs
Position
8:complement(5476952..5492053)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDVEAEDRDLDERDDDDEDEPADAEDDTPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKHRRFALMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTASMRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTHGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFILEPLYKILSQVVGDVDTSLPRVLDELGIHLSKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHVPSPQEGARIKIEHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYSLEDEEDSSVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttgggaactacatcggtccagagctggattctgat
gatgatgaagatgacgtggaggcagaggacagagatctagatgagcgtgatgatgatgat
gaagatgagcctgcagatgctgaggatgataccccaggcatggaggtggtcctccatgag
gataagaagtattatccgactgcagaagaggtttatgggccagaggtggaaactattgtc
caagaggaagacacacaacccttaacagagcccatcatcaagccggtgaagcacaggcgt
tttgctctgatggaacaggagctgcctgcaacagtttacgacatggaatttcttgcagat
ctaatggatggtcccgagctgatccgaaatgtcacactctgtggtcaccttcatcatggc
aagacttgttttgtagattgtctgattgagcagacacacccagaaatccggaagagggat
gatgtagatctccggtacacagacatcctctttacagagcaagagagaggagttggcatc
aaaagcactcctgtcacgatggtcctgcccgactccagaggaaaatcctatttgttcaac
atcatggatactccaggtcacgtgaacttctctgacgaggtcacagcaagcatgaggatc
tcagacggtgttgtcctcttcatcgatgcagcagagggagtgatgctgaacacagagcgt
ctgatcaaacacgccgttcaggagcgcatggccatcaccatctgcatcaacaaggtggat
cgtctcatcgtggagctcaaattgcctcctacagatgcatattataaacttcgtcacatt
gtggatgaggtcaacggtttgctcagtacgtactccacagacgagaacctggtggtgtct
cccctccttggaaatgtctgcttcgccagctctcagtacagcatttgcttcactctcgga
tcctttgcgaagatctactctgacacacacggagatatcaactataatgaatttgccaag
agactctggggagacatttacttcaatcccaaaactcgtaagttcactaagaaagctccc
agcagtaactctcagcgcagctttgtggagtttatcctggagcctctctacaagatcctc
tcacaggttgtcggggatgtggacacatccctgccccgagttctggatgagctggggatc
cacctgtcgaaggaggaactgaagctgaacatcagacctctgctgaggctggtctgtaac
cgcttctttggagaattcaccggttttgtggacatgtgtgtgcaacatgtcccatcacca
caagagggcgctaggattaagatagagcacacctacactggaggcctggattcagacctg
ggggaggccatggcagaatgtgaccctgatggtcctctcatgtgccacaccactaaaatg
tacagcactgaggacggggtgcagtttcacgcattcgggcgtgttctgagtggtaccatt
caggcaggtcagcccgttaaagttttgggggagaactattctctggaggatgaggaggac
tcttccgtctgcaccgtcggccgcctctggatctctgtggccaggtaccaaattgaggtg
aatcgagtgccagcaggaaactgggtgcttatcgaaggctgtgaccagccgatcgtgaag
acggccacaatcacagaacccagagggaacgaagaggctcaaatcttcaggccattaaag
ttcaacacagcatcggttatcaagatcgcagtggagccggtgaacccgtcagagctgccg
aaaatgttggacggcctgaggaaggtcaacaagagctacccttccctgaccacaaaggtg
gaagagtctggagagcatgttatcctaggaactggagagctgtacctggactgtgtgatg
cacgacctgaggaagatgtactctgagatcgacattaaagttgcagacccggtcgtcacg
ttctgtgaaaccgttgtggagacatcgtctctgaagtgctttgccgagacgccaaacaaa
aagaacaagatcaccatgattgcagagcccttggagaagggactcgcggaggacatcgag
aacgaagtggtgcagatcacgtggaacaggaaaaagctgggggagtttttccagacaaag
tacgactgggatctgctggctgcaaggtccatctgggcctttggaccggacacaacagga
cccaacattctcgtggacgacacgctgccgtcagaggtggacaaggcgctgctcggctcg
gttaaagacagcatcgttcaggggtttcagtggggaaccagggagggccccctgtgtgat
gaacccatcaggaatgtcaagtttaagatcctggatgctgtgatcgctcaggagcctctg
cacagaggaggaggtcaggtcatccccacagccaggagagtggtgtactctgcctttctc
atggcgacgccgaggctgatggagccgtactactttgtggaggttcaggctccagcagac
tgtgtttcggcagtctacacagtgttggctcgaagaaggggccacgtcacccaagatgct
ccgattcccggctcccctctttacacgattaaggcttttattcccgccatcgactcgttt
ggctttgagacggacctccgcactcacacgcagggccaggcttttgctttgtctgtgttc
caccactggcagatcgtacccggagaccccctggacaagagtatcgtgatcaggcctctg
gagccccagcctgccccccatctggcccgagagttcatgatcaagacccgaagacgcaag
ggtctaagcgaagatgtgagtatcagtaaattcttcgacgaccccatgttgttggagctg
gcaaaacaagacgtggtgctcaactacccaatgtga
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