Oryzias latipes (Japanese medaka): 101160694
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Entry
101160694 CDS
T02443
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03440
Homologous recombination
ola03460
Fanconi anemia pathway
ola04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101160694 (brca1)
09124 Replication and repair
03440 Homologous recombination
101160694 (brca1)
03460 Fanconi anemia pathway
101160694 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101160694 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101160694 (brca1)
03036 Chromosome and associated proteins [BR:
ola03036
]
101160694 (brca1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101160694 (brca1)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101160694 (brca1)
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101160694 (brca1)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101160694 (brca1)
Multi subunit type E3
BRCC complex
101160694 (brca1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101160694 (brca1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101160694 (brca1)
BRCA1-A complex
101160694 (brca1)
BRCA1-B complex
101160694 (brca1)
BRCA1-C complex
101160694 (brca1)
BRCA complex
101160694 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
101160694 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_UBOX
zf-Nse
RTT107_BRCT_5
zf-RING_5
PTCB-BRCT
TRAF3_RING
zf-RING_6
zf-MIZ
zf-RING_4
zf-ANAPC11
zf-RING_10
Prok-RING_4
RING_ZNF598
zf-rbx1
YicC-like_C
Motif
Other DBs
NCBI-GeneID:
101160694
NCBI-ProteinID:
XP_011486263
UniProt:
H2LIE0
LinkDB
All DBs
Position
19:complement(5186111..5209538)
Genome browser
AA seq
1292 aa
AA seq
DB search
MKTPKSSDVRKGIADLWETLQCPICLDLMAVPVSTKCDHKFCKFCMTKLLDSSKQNGASC
PVCKSKITRRSLRESPSFQKLVTGLQDIIQAYERDTGTNYFTGLINQKKPSSLSGETPDV
ENADQDISHSHSSTIAAQSDFAKLMGLEDSAPLGTEHECVDSGLGDAPPTSDRKLSSPTH
SCEPTVTVRKVGLTHKTRKRKKSSNLTKASSDPESTQDEPLRKSSRKKKRKDLEPDQILE
EKKKKSLEKVAEWLLKVPVDEERPPEEAEDSDSASSASTIDLKAHNSDLNAKREDRAKAL
EDQVFGAVYRRRGTRSTSPLRKDFEELDDSRPEQQGGLKKIKEKQAAEEMTVFKRGEEME
VVEENGLNLSADELEKEEGKWEVPHSSPDAMQQKDEKTQRRSRSPLQDVDLDLKVQLQGQ
SEVHEQKTTDGRKERNARLKKGQPTKVPPLVLVAAHNGGSSIPKTGERSEEVQVQIENYP
SSEDQETPIRRRSSRKSKRLQLSSKKFLNKKVNFKICFPDKGTKMPVDSLKSENATQRNG
CVYQQELGGIESMDSGDKISFLKTAEEPQLLSEADASVVSNSISPSAVDPALPEENPKRG
PPVGEPQMENEEKNDSELDTEQLLRSFKSAKRKSFHLGPPSMKKNRSDKEEETSMDGKEA
RCGDSDLSQQQKPETEKSSCSDLIPPSVSPFQTRRTAIEKQDQVVQASITDDLPSDQEAF
ARKSTLKSSQSSNLSPNEVSKWDKESSPLSVVPQVGESGLIFRAVQRQETQLPLTADGHS
SDASKVPETRNESPESYLPGTCRSNAAKHAFLPEYSLTPDGLVEHETSVDASGDISAHSS
VNTKPKKKRAQRLESSSESNGSGAEAELPTLKEIFGNAAGNQREAEGCEEAEGPAVEAAE
PCAEPCPSPDSQASVDLFGTPEECEVPVNDTSVSIESSQFSSEILVTQQKIEMQKELVRL
EKLMALVSEVLQEKEENPAQNLPPDSRQINKVTSPDADPSLRNDQDPVQGSDRMDIPGGA
EDLKRVSSEEKVAIEVAVSSHGDATEMATRTAQKSILPPHGQDDKENTSPPKAGAKGKPV
FVSSGLGPTEQIMVKKFAKRIGARVVSRVTSEVTHVVMRTDDQLVCERTLKYFLGIAGRK
WVVSFQWISESLKQKNLLDESLFEVRGDVVNGPNHCGPQRGRTAEDHNLLLKGFKICFQG
SFTDMTTDEMELMVELCGATVVKDPLFFDSKQPHQLVIVQPRSDASSSTYSSLARKATVV
TRGWLLDTVATYTVQNYKNYTIYGRENPSISS
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacccccaaatccagtgatgtcaggaaaggaatcgctgatctttgggagactctg
cagtgccccatatgcctggatttaatggctgtgcccgtatctactaaatgcgaccacaag
ttctgcaagttttgcatgacgaagcttttggacagttccaaacagaacggggccagctgt
ccagtttgtaaatccaagattactagaaggagcttacgagaaagtcccagctttcaaaaa
cttgtcacaggattgcaggacatcatacaggcttatgaacgtgacactggaacaaactat
ttcactggtttgatcaaccagaaaaaaccctcaagtttatctggagagactcctgatgtg
gaaaatgcagaccaagatatttcacattctcactcttccactattgcagctcagagtgat
tttgcaaagctgatgggacttgaggactcggctcccttaggaacggagcacgagtgcgtg
gacagcggcctcggcgacgctccgccaaccagtgacaggaagctgtccagccccacccac
agctgtgagcccacggttactgtcagaaaggttggactaacgcacaaaaccaggaagagg
aagaagtcctccaacttgacgaaagcctcttctgatccagagtcgacccaagatgaacct
ttaagaaagtcttcaaggaaaaagaagagaaaagatcttgaacctgaccaaattcttgag
gagaaaaagaagaaaagcttggagaaggttgcagagtggctcctgaaagtgcctgtagat
gaagagcgacctcctgaagaggctgaagactctgacagcgcttcgtctgcatccactata
gatctcaaagcgcacaattctgatttgaatgctaagagagaagatcgagcgaaagcgttg
gaagatcaggtgttcggtgccgtctacagaagaagagggaccaggtccacctcacctctg
aggaaggatttcgaggaattggatgattccagaccggaacagcaaggcggtttaaaaaaa
attaaagaaaaacaagcggcagaagaaatgactgttttcaaaagaggagaagaaatggag
gttgtagaggagaatggtttaaatttaagcgctgacgaattggagaaagaggaaggcaag
tgggaagttccacactcttctccagacgcgatgcagcaaaaggacgaaaagacgcagaga
aggtcccgaagtcctctgcaggacgtggacttggatttgaaagtgcagcttcaaggacaa
tcagaagttcatgagcagaaaacaactgacgggagaaaagaaaggaacgcaaggttaaaa
aaaggccaacctaccaaagtcccgcctcttgttttagttgctgctcacaatggaggatcc
agcatcccgaagactggagaaagatcagaagaagtccaagtgcaaatagaaaattacccg
agcagtgaagatcaagaaacccccatcaggagaagaagctcacggaaaagtaaaagactt
cagctttcttctaagaaattcctcaacaagaaggtcaatttcaaaatatgttttcctgac
aaagggacaaagatgcccgttgactcccttaaaagtgaaaacgccacacaaagaaacgga
tgtgtgtaccagcaagaacttggtggaattgaaagtatggactctggtgacaaaatctcc
ttccttaaaacagcagaagaaccacaacttctgtctgaagctgatgcatctgtggtctcg
aactctataagtccatctgcagtcgacccagccctcccagaggaaaatcccaaaagaggt
cctcccgtcggagaacctcaaatggaaaacgaggagaaaaatgacagcgagctggacacg
gagcagcttctcagaagcttcaaatcagccaaaaggaaatctttccatcttggcccacca
agcatgaagaagaatcgctcggacaaagaggaggagaccagcatggacggaaaggaggcc
cgctgtggggattctgatctttctcagcagcagaaaccagagactgaaaaatcctcctgc
agtgatttgattcctccgtcagtctcaccctttcagacgagaagaacggccattgagaaa
caggatcaagtggtccaagcttccatcactgatgacctcccttcagatcaggaggctttt
gccagaaagtccacccttaagagtagccaaagcagtaacctcagtcccaatgaagtgtcc
aagtgggacaaggaaagctctcctctttctgttgttcctcaagttggagaatccggcctc
atcttcagggctgttcagcgccaagagacgcaactccctctgactgctgatggtcactcg
agtgatgcaagcaaagtgccggagacgaggaatgaaagtccagaaagttacctacccggt
acctgcagatcgaacgcagccaaacacgccttccttccagagtattctttaacccctgat
ggcctggttgaacacgagacgagtgttgatgctagcggagacattagcgcccattcctct
gtaaataccaaaccaaaaaagaaaagagctcagaggctggagtcttcatcggaatccaac
ggcagcggagccgaagcggagctcccaactttgaaggaaatctttggaaatgcagctgga
aatcagagagaagcagagggatgcgaggaagcagaaggtcctgctgtggaggctgcagaa
ccctgtgcagaaccgtgtcccagcccagacagtcaagcatctgtggatttattcggcact
cctgaggaatgtgaagttccagtaaatgacaccagtgtttccattgagtcctcccagttt
tcaagtgaaatccttgtaactcagcaaaaaattgaaatgcaaaaggagctggtcaggctg
gagaagctgatggctcttgtttcggaggtgttgcaggagaaggaggagaaccccgctcaa
aatctcccacccgacagccgtcagatcaacaaagttacaagcccagatgctgatccttcc
ctccggaatgaccaggacccagtccaaggctcagacaggatggatattccaggtggagca
gaagatctcaaaagggtgtcgtcagaggaaaaggtggcgatcgaggtcgccgtatcgagt
cacggtgacgccacagagatggcaaccagaacggcccagaaaagtattttaccgccacac
ggacaagatgacaaagaaaataccagccctcctaaagcaggagccaaaggaaagccggtg
ttcgtgtcttctggattgggtcccactgagcagatcatggtgaaaaagtttgccaagagg
attggagcgcgtgtggtttcccgtgtgacatcagaagtgacgcatgtcgtcatgcgcaca
gatgatcagctggtctgtgagcgcaccctaaagtatttccttggaattgcaggcaggaag
tgggtcgtcagcttccagtggatttccgaatccttaaaacagaagaacctcctggatgag
agtctttttgaagtgagaggtgatgtggtgaatggaccgaaccactgtgggccccagagg
ggtcgcaccgctgaagaccataatctgctcctgaagggcttcaaaatctgcttccaagga
tcttttactgacatgacaacagatgaaatggagttgatggtggagctctgtggagcaact
gtggtcaaagacccactattttttgacagtaaacagcctcatcaactcgtcatcgtacag
ccaagatcagacgcttcatcttcaacatacagcagtttggccagaaaggctacagttgtg
acccgcgggtggctcttggatacggtcgcaacctacactgtgcagaactacaaaaattac
accatatatggacgtgaaaatccttcaatttcctcttga
DBGET
integrated database retrieval system
