Oryzias latipes (Japanese medaka): 101161132
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Entry
101161132 CDS
T02443
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04010
MAPK signaling pathway
ola04120
Ubiquitin mediated proteolysis
ola04140
Autophagy - animal
ola04144
Endocytosis
ola04620
Toll-like receptor signaling pathway
ola04621
NOD-like receptor signaling pathway
ola04622
RIG-I-like receptor signaling pathway
ola05132
Salmonella infection
ola05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101161132 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
101161132 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101161132 (traf6)
04140 Autophagy - animal
101161132 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
101161132 (traf6)
04621 NOD-like receptor signaling pathway
101161132 (traf6)
04622 RIG-I-like receptor signaling pathway
101161132 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
101161132 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
101161132 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ola04131
]
101161132 (traf6)
04121 Ubiquitin system [BR:
ola04121
]
101161132 (traf6)
Enzymes [BR:
ola01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101161132 (traf6)
Membrane trafficking [BR:
ola04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
101161132 (traf6)
Ubiquitin system [BR:
ola04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
101161132 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF6_Z2
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF3_RING
RING_XB3-XBAT31
zf-rbx1
U-box
DM
zf-RING_11
zf-TRAF_2
Motif
Other DBs
NCBI-GeneID:
101161132
NCBI-ProteinID:
XP_004066897
LinkDB
All DBs
Position
3:8670893..8689203
Genome browser
AA seq
570 aa
AA seq
DB search
MMACFDSNKGSLEYDGIEGASGGGLSECASAMLEKERESLPSPSDNPTASMGSSSLQAAA
PLQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDNEM
LSEDQLFPDNFAKREILSLTVRCPNSDCGEKMELRHLEKHLAQCQFATVPCSQCQQPVRK
SYLEEHATVECPRRPMSCPDCVAVFVYEEREMHEQQCPFASVMCQYCEMDLIRDQMESHC
DTDCPKAPIACTFSIFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLALNGTAPKPLH
LQGGPVSCRDQGAAAPASNCSVAPGALSCSNSSASCQPSEEMQRIREMDARLVKQDHQLR
ELIILKDTQAGQLAELRRRVSVLEETVKELEAQQYHGIFIWRLKAFSTHLRSQEAGIPVV
EHSPGFYTGRPGYKLCLRLHLQTPTAPRCSNFISLFVHTMQGVFDSQLTWPFQGTIRLAI
LDQGPEGQHHMEVMETKPDLQAFQKPINQRNPKGFGYVTFMHRSLLSQRAYVKDDTLLIR
CEVTPRFDSGFNREGPAVQPRGPEASLSRD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttgctttgacagtaacaaggggagtttggagtacgatggcattgaaggagct
agtggtggagggctgtcggaatgcgcctcagcaatgctggagaaggaacgggagtccctt
cccagcccgtcagacaacccaaccgcctccatgggcagctctagtcttcaggccgccgcc
ccccttcagggctatgatgtggagtttgaccctccgctggaaagcaagtacgagtgcccc
atctgcctcatggctttgaggaatgccattcagacgcgctgtggtcatcgtttctgcaaa
agctgcattgagaagtccattcgtgatacaggacagcgatgcccagtggacaacgaaatg
ctgtcggaagaccaactgtttcctgataattttgccaaaagggagattctttcgctcact
gttcgctgtccaaattccgactgtggtgagaaaatggagctccgacatttagagaagcat
ttggcgcagtgtcagtttgctactgtgccatgctcacaatgccagcagcccgtgagaaag
agctacctggaggagcacgccactgtcgagtgtccaaggagacccatgtcgtgtccagac
tgtgtggccgtctttgtttacgaggaaagagagatgcacgagcagcagtgtccctttgcc
agtgtgatgtgccagtactgtgagatggacctcatcagagatcagatggaatctcattgt
gatactgattgcccaaaagcaccgattgcttgcacctttagcatatttggatgtaaggaa
aggatgcagcgccacaacctggctcagcacatgcaggagttcacgcagatgcacatgcgc
tacatggctgagttcctgcgcggcctggccctcaacggcactgcgcccaaacccctgcac
ctgcagggaggccctgtgtcctgtagggatcagggagccgcagcgccggcgtccaactgc
agtgtggcccccggggccttgagctgcagtaacagctctgcttcctgtcagccgagcgag
gagatgcagagaatccgagagatggatgcccggctggtgaagcaggatcatcagctgcgg
gagctcatcattctaaaagacacacaagcagggcagctggccgagctcagacggagggtg
tcggtgttagaagaaacggtgaaggagctggaggcccagcagtaccacgggatcttcatc
tggcggctcaaagccttctccactcacttgcgaagccaggaagctggcattcctgttgtg
gagcacagccccggcttctacacgggccgcccgggctacaagctgtgtctccgtttacat
ctgcagacccccaccgccccccgctgctccaacttcatctccctttttgtccacaccatg
caaggcgtttttgacagccaactgacctggccattccaagggaccatccggctcgccata
ctagaccaaggacccgagggtcagcaccacatggaggtcatggagaccaagccagacctt
caggccttccaaaagcccatcaatcagcgtaatcccaaaggatttggctacgtcaccttc
atgcaccgctcccttctgagtcagagagcttatgtcaaggatgacacgcttcttattcgt
tgtgaggtgacgccccgttttgacagtgggtttaaccgtgagggacctgctgtccagccc
agagggcccgaagcatcactttcaagggactga
DBGET
integrated database retrieval system
