Oryzias latipes (Japanese medaka): 101162718
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Entry
101162718 CDS
T02443
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ola03036
]
101162718 (smchd1)
03400 DNA repair and recombination proteins [BR:
ola03400
]
101162718 (smchd1)
Chromosome and associated proteins [BR:
ola03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101162718 (smchd1)
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101162718 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMC_hinge
HATPase_c
MRP-L46
SF1-HH
Motif
Other DBs
NCBI-GeneID:
101162718
NCBI-ProteinID:
XP_023805883
LinkDB
All DBs
Position
20:20399216..20432618
Genome browser
AA seq
1964 aa
AA seq
DB search
MHRIPAGAAAAAALLKGGRPNKRILVYDCRDEEDVASKVLETRGLDFHGFLQILHKSFGI
DVRETFALVTTDRVVVDQDRFDELQDDCTLHLLQHEGQTLPTATEKNIMFTPHYDTLIKS
GTHEYYSENQKSLPYALAELVDNSLSATARNKGLRRIEIRLIFDKTLGKHGVLVLDNGCG
MTSEQLNNWAVYRLSKFTKQRNKFTSEKEGYVRPDHIHRSLNSDISYFGVGGKHAAFFIG
DSVRMISKPRDSPYVHELLLSKEEFKRKEQSNQDVFSGTILNRMPGVSSHITKDERFLHD
VIQEESEKQSFTVVVITGIIPDHIDHLKEDFEEWTRELAHIYHYYIHGANGNVLSQPRDP
SQRIDIVVTLREKPPKALCSLNLREVNNDMQTLYINSAADTFEFQATPPGDDGFVEGVLR
YHPFLYDKETYPKDPSASHESDDDDCDDNESEARGKRDIFECFWNGRLVPYTTVSEFDWC
SRPKKSCALPAECFSRLSGVLFTNDKFAVSTNKLKFMELELKLRNKETIFTPIFKDQQKF
SKRGNIEKEFMQWLQNCHERYDKQVKFFGFTKTITRTDGPGKQNTPWGEFSAIEWDGKIY
RAGQLVKSQRKTPTLYGTVVRFLLCGEYDGDIFATGGEVEFTREPSVLYNEKKTMPISKI
DRTASDEVIKKGISKDNDKLPDKLSLVWQEQIPWKEDVIVPEIPAGTSIGPLKVEILNRK
GDVISQINTGGQGRGTMSVKLQVIRHEPKQEKTIATFSAPFVKAINGHWFKKIGPLTDLG
KYTLVLSTVVGELSSTSLGNRLLLSSTHHFSIKAAKEDNFTVCQLSPTCRVGIPFNMVLQ
IKDCYGHPTPLSSDTKPVLKCSGLDISYETVSKSDTKVTIKGVVVRGKIQMHQQAKNYDL
QVTLPGLTTPKQTEQIGLLPGAPHSLHVKEETVAVENGSPAILNVEIHDEAGNLTANPKQ
LVRYQVEGLKPFVIDCSKTGAGQVVTKPIQLNITGGEPQMLQVTFQLLPEKVPPVVIRLK
VVPSSRVAQMEVYSQNECLVLKNEEKISWPAGGLLENLCYRLFDERGVEVPLTAKITSKI
KVNWTRDTNIKDLVLGKLPEIPVPTQLQEERFCQVSYQEQNVSFSFIIVPCPNEPSRLKA
TLPQNTLKLGQVMTEPIYLNLVDQYDNETRRLTPSCVKDMTVEAEGLDKSKISFAWQQSR
SSVAVTGVRFHSGPLGPRELCFHYSSFEERVIIKMTAGDPAELKLISGPEQPLQVLKGQG
IPTPFLLQLCDEWGNPSPDQRVVVEIASSRQSLKLTIPVLSQPVDAEGKAIFYVNAINGA
KGYHQLNFKGSFNNKPIKAPSVSLTVIPDPNKPVKLSVEYNKKAKLFAGGTFPVFSVTVV
SDEGSPITDINPVDFSMLLWKGESPTPPKTVTTLKCSKPVVNGKNDCYYFREKSIPEQIG
PHTIQFTLQNDKKEVLLVNQIRIIVVPNHPVKLAPTSPLNTPSVSYSVDVASRTLVENVT
LVIMDKFGNPAGQNLKGKVTVSISCPDLEGSRNLPLFEGKAKSVDFTLEEGKAHISRLAL
MEKSPGENGSTYVLIFHPHVSTPLDPFQLNFHFYNDVENQRNMSELTKKKENLTAAIIQF
DQTNETFRKLQNLYGQQSKNANNKVTALRNDMSRRGLKILPSVSIASIEQMISEKTAEAA
QFERAPRRVCSIPNNFSGPDVLGVVGHLALIEDDEAARVISWHLRGDMDCVITRTTEAAR
SIYADTHGNQQVMPLDSISNYTAERPLPHTKNGRALFAPAGNPVYARHLLICPKEKQICD
TVFKNLLGETIVMDDLNSATNYRREVLRNQAFCPTILTRDGNRVSAKGKFGGSQNKAPRI
EGLQVFSAPFPKRYYALKEETDMLLEYFAALTKKEKAEEEQRNHLKTLESPEMMQKQEQV
TQMKMQLQEIEKQLASVRPQKRPSRCSAEPSNVSKRQRGNFFSS
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcatcccggcgggggctgcagccgctgctgccctcctgaaaggaggaagaccc
aacaagcggatccttgtttacgactgccgcgatgaagaagatgtggcgagtaaagttctg
gaaaccaggggtttggacttccatgggttcctccaaatcctccacaagagttttggtatt
gacgtacgagagacttttgccctggtcacaactgacagggtagttgtggatcaagacaga
tttgatgagcttcaggatgactgcaccctgcacttgttgcagcatgaaggtcagactctg
ccgactgcgacagagaagaacatcatgttcacgcctcattatgacaccctgatcaagagt
gggactcatgagtactactccgaaaaccagaaatctctgccttatgctcttgctgagctg
gtagacaactccctttcagccacagctagaaacaaaggattgaggaggatagaaatccga
ctgatctttgacaaaactctcggaaaacatggagttcttgttttggacaatgggtgtggc
atgacatcagagcagctgaacaactgggccgtctacaggctctccaaatttactaagcaa
agaaacaaatttacaagtgagaaagagggatatgtgcgccctgatcacatccaccgcagt
ctaaacagtgatatatcttactttggagttggaggaaagcatgctgcattcttcattggg
gattctgtcaggatgatcagcaaacctcgggactctccatatgttcatgaattgctctta
tccaaagaggagtttaagcgaaaagagcaaagcaaccaggatgttttctctgggaccatc
ttaaacagaatgcccggcgtctcctcccacataacaaaggacgagcgcttcctccatgat
gttattcaagaggagtctgaaaaacaaagcttcactgttgtcgtcatcacaggaatcatt
ccagatcacattgatcacctgaaggaagactttgaagagtggaccagagagctagcgcac
atttatcactactacatacatggcgccaatggaaatgtcttgagtcaaccaagagatccc
tcccagagaatcgacattgtggtcacgttgcgggaaaagcctccaaaagctctctgttcg
ttgaatctcagggaggtgaacaatgacatgcagactctgtacatcaactctgctgctgac
accttcgagttccaggccacccctccaggggatgacggtttcgtggagggcgtgcttcgg
tatcatccgttcctctacgacaaggagacgtaccccaaagatccaagtgcttctcacgag
tccgatgatgatgactgtgatgacaatgaaagtgaagcaagagggaagcgagacatcttt
gagtgtttctggaatggacggctcgtcccgtacaccaccgtgtctgagtttgactggtgc
tctcgaccaaagaaaagttgcgctttgcccgcggagtgtttcagccgcctttcgggggtt
ctcttcaccaatgacaaatttgccgtcagcaccaacaaactcaagtttatggagttggag
ctgaagctgaggaacaaggaaaccatcttcacccccatttttaaagaccagcaaaagttt
tcaaaaagagggaacattgagaaggagttcatgcagtggcttcaaaactgccatgaaagg
tacgacaagcaggtgaagtttttcggctttacaaagaccataacgcgaactgatgggccc
ggcaagcaaaacactccctggggagagttctctgccatcgaatgggatggaaaaatctac
agagctggccaacttgtaaagtctcagagaaaaacgcctaccttgtacggcaccgtggtt
cgattcctgctctgtggggagtatgatggagacatctttgccaccgggggagaggtggag
ttcactcgtgagccgtctgttctttataatgagaagaaaaccatgcctatttccaaaatt
gacagaaccgccagcgatgaagtcatcaaaaagggcatttcgaaagacaatgacaagctt
ccagacaaacttagcctggtgtggcaggagcaaatcccttggaaagaggacgtcatcgtc
cctgagattcctgccgggacttcaatcgggcctctaaaagtggagattctgaacagaaag
ggggatgtgatttctcaaatcaacacgggtggtcagggacgagggacgatgagtgtcaag
ctccaagtcatccgacacgaacccaaacaagaaaagacgatagccacttttagcgcacca
tttgtgaaggctataaatggacactggttcaaaaaaatcggaccattaaccgatctgggc
aaatacacattagtcctgagcaccgttgtaggtgaactgagctccacttctcttggaaac
aggcttcttctgagcagcactcaccacttctccatcaaagcggccaaagaagacaacttc
actgtctgccagctgagcccaacctgtcgtgtgggaattcccttcaacatggttctgcag
ataaaggactgctacggccaccctacacctctgtcttccgacaccaagcccgtcctgaaa
tgcagtggccttgacataagttatgaaacggtgagcaaaagtgacaccaaggtcaccatc
aaaggggtcgtagtgcgaggaaagatccagatgcaccagcaggcaaagaattatgacctt
caggtgaccctgccaggtctgaccacacccaaacagaccgaacaaattggccttctccca
ggcgctccgcattctctgcacgtgaaggaagagacagtggcagtggagaatgggagcccc
gccattcttaatgttgaaattcatgacgaggctggaaacctcaccgccaacccaaaacag
ttggtccgctatcaggttgaggggcttaaaccgtttgtgattgactgcagcaaaacagga
gcgggccaggttgtaacgaagcccattcagctgaacataacgggcggagagccgcagatg
cttcaagtgacctttcagcttcttccggaaaaagtcccgcctgtcgtgatcaggttgaaa
gtcgtacccagtagccgagtcgcgcagatggaggtctactctcagaacgagtgtttggtt
ctgaagaacgaggagaaaatcagctggccagcaggaggattgctggagaacctgtgctac
aggttgtttgatgagcgcggcgttgaggtgccgctcaccgctaagatcacctccaagata
aaggttaactggacacgagacacaaatattaaggatttggttctcgggaagctgccggaa
atcccggtgcccactcagctgcaggaggagcgcttctgtcaggtttcctaccaggagcag
aacgtgtctttttctttcatcatcgtgccttgtccgaatgaaccatcgcggctaaaagcc
actcttcctcaaaacacactgaagctcggtcaggtcatgacagaacccatctacttgaac
ctcgtggaccaatatgataatgaaaccaggaggctcacgccgagctgtgtgaaggacatg
actgtagaagctgaggggctggataaatccaaaatctccttcgcatggcagcaaagcaga
agttctgttgcggtcactggtgttcgtttccactcgggcccgctgggccccagggagctc
tgcttccactacagcagctttgaggagcgggtcatcatcaaaatgacagctggggaccct
gcagagcttaaactcatcagcggaccagagcagccgttgcaggtgttaaaaggccagggc
atccccaccccattcctcctgcagttgtgtgatgagtggggaaacccttcaccagatcag
agagtggtggtagaaatagcatcttcacgacaatcactgaagctgacaattccagtcttg
tcccagcccgtggatgcagaagggaaagccatattctatgttaatgccatcaacggtgca
aaggggtaccatcagttgaattttaaaggttccttcaacaacaaacccatcaaagctccc
tcagtttccctcactgttattcctgatccgaacaaacctgtgaaactgtcagtggagtac
aacaaaaaggccaagcttttcgcaggaggcaccttccccgttttctcagtgactgtagtg
tccgacgagggaagtccaataaccgacatcaacccagtggacttttccatgctgctgtgg
aagggagagtcacccactcctccaaaaacggtcaccacgttgaagtgcagcaaaccagtg
gtaaatggaaagaacgattgttattatttcagagaaaagtccatcccagagcagatcgga
ccacacaccattcagttcaccctgcaaaacgacaaaaaagaagttctgcttgtcaatcag
atccggataatcgttgtccccaatcatcctgtcaaactggcccccacctcccccctcaac
actccatctgtttcctacagcgtcgacgtggccagcagaactttggtggagaacgtcact
ctggttattatggataagtttggaaaccctgcaggacagaaccttaaggggaaggtgacc
gtctccataagctgtcccgatctggagggtagcaggaatcttcctctgtttgaggggaaa
gccaagagcgttgactttactttagaagaaggaaaagcccacatctccaggttggccctc
atggagaagagtcccggtgagaacggcagcacctacgtcctgatcttccatccacacgtt
tccacacctctggatccttttcagctcaacttccatttctacaacgatgttgaaaaccag
cgaaatatgtcagaactgaccaagaagaaagaaaatctcacagcagccattattcagttt
gatcaaacaaatgaaacatttcgcaaactccagaatttatatggacaacaatccaaaaat
gcaaacaataaagtgacagcccttagaaatgacatgagcagacggggcctgaaaatcctc
ccatctgtatctatcgcaagtattgagcagatgattagtgagaaaaccgctgaagctgca
cagtttgagagagcaccaaggagagtttgctccatcccaaacaacttcagcgggccagat
gttctgggagtggttggacatttggcactaatcgaggacgatgaggctgcaagagtcatt
tcctggcatctccgaggggacatggactgcgtcatcaccagaacaacagaagcagccaga
agcatctacgccgacactcatggcaatcagcaagtcatgcccctggacagcatttcaaat
tatacagcagaacgaccgctgccacacacaaaaaacggccgcgcgctctttgctccggcc
gggaatccggtttatgcccgccacttgctgatttgccccaaggaaaagcagatctgtgac
actgtgtttaaaaacctccttggggaaaccattgtgatggacgacctgaactctgccacc
aactacaggagggaggtgttgaggaaccaggcgttttgccccaccatactaaccagagat
gggaaccgggtcagcgccaaaggcaagtttggaggctcccagaacaaagcgcctaggatt
gaggggctgcaggtcttctcagcgcctttccctaaacgttactacgctctgaaggaggaa
acagacatgctgctcgagtactttgctgccttaacgaaaaaggaaaaagccgaagaggaa
cagaggaatcacttaaagactttggaatcgccagaaatgatgcagaagcaggaacaagtc
acccagatgaagatgcaacttcaggagattgaaaagcaacttgcatcagtaagaccacag
aagaggccatccagatgttctgctgagccctccaatgtttcaaaaagacaaagaggaaat
ttcttctcctcataa
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integrated database retrieval system
