Oryzias latipes (Japanese medaka): 101162834
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Entry
101162834 CDS
T02443
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X2
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101162834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ola03400
]
101162834
Enzymes [BR:
ola01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
101162834
DNA repair and recombination proteins [BR:
ola03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
101162834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AT_hook
Motif
Other DBs
NCBI-GeneID:
101162834
NCBI-ProteinID:
XP_004069446
UniProt:
H2L735
LinkDB
All DBs
Position
6:complement(8168083..8172610)
Genome browser
AA seq
504 aa
AA seq
DB search
MYDSYQYDQHHLEEQSVNPYCTMDYYSENPTEESVMRQQAIHQDPSVHQEPGYSSYLPPS
NHNQVHHCQQSFREHQYQHHASALHHQQQQTSEFQHQHHYPSSALHHHHHQQQQQQTSSE
FYPQLQQNPSAAYNPYHQLQQQLKTELHPQQHRPHPSALYHPYHQSHQQQQLNTEQHPST
LNYPHYQMQEQPAPQPPPQHQYTVQQGGPSIQFKTEPSDVPQPVTPAKKKRGRPSKQQVE
EETLEEENDIVAAKKAKRTLNRFNGMSVEEVMAKTLPDVITYNLDILIIGINPGLLSAFK
GHHYPNPGNHFWKCLFLSGLTEEQLNYMHDQNLPEKYSIGFTNMVERTTPGSKDLSSKEI
REGGRQLLEKLQKYKPLIAAFNGKGIYEIFCKEIFGVKAKNLEFGLQPYKIPETETVCYL
MPSSSPRCAQFPRAQDKVHFYIKLKELRDQMKGLLPGGEVVETQYSFDLQLAKEDAKRLS
IKEEQVDPEYESCTGLQTELRQSS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacagttaccagtatgatcagcatcatcttgaggaacagagtgtaaatccatat
tgcaccatggactattattctgaaaatcctactgaggagtctgtaatgagacagcaggcc
atccaccaggatccatcggttcatcaggaacctggttacagcagctatcttccaccctcg
aaccacaaccaggtgcatcactgccagcagagcttcagggagcatcagtaccaacatcat
gcttcagctttgcaccatcagcagcaacagacatcagagtttcagcatcagcaccattat
ccttcttcagccttgcaccaccaccatcatcagcagcagcagcagcaaacttcatctgag
ttttaccctcagctacagcagaatccctccgctgcatataatccgtaccatcagcttcag
cagcagcttaaaactgagcttcaccctcagcagcaccgaccgcatccttcagccttatac
cacccttaccatcagtcccaccagcagcaacagcttaacactgagcagcacccttcaact
ctgaattaccctcactatcagatgcaggagcaacctgcaccccagcccccccctcagcac
cagtatacagtgcagcagggagggccaagtattcagttcaagactgagccttctgatgta
cctcaacctgtgacaccagcaaagaagaagagaggccggccttccaaacagcaggtagaa
gaagaaacacttgaagaggagaatgacattgtagctgccaaaaaagccaagaggactctg
aaccgctttaacggcatgtcagtggaagaagtcatggccaaaactctgccggatgtcatc
acctacaatttggatattttgataatagggattaatccaggactgctgtcagcattcaaa
ggacatcactacccaaacccaggaaatcatttctggaaatgtctatttctgtctggtctg
actgaagagcagctcaactacatgcacgatcagaacctgccagagaagtacagcatcggc
ttcaccaacatggtagagaggaccacgcctggaagcaaggacctctccagtaaggagatt
cgtgaaggaggtcgacagttacttgaaaagctgcaaaaatacaaaccattaatagcagct
tttaatggcaaaggcatttacgaaatcttttgtaaagaaatatttggtgtgaaagccaaa
aatctggagtttggcctgcagccctacaaaatcccagaaactgaaacggtttgctacttg
atgccatcatcaagcccccgctgtgcacagtttccacgtgcacaagataaggtacatttt
tacatcaagcttaaggagctgcgggatcagatgaaaggcctgctccctggcggcgaggtg
gtggagacgcaatactcttttgacctgcagctcgctaaagaggatgctaaaagactctca
atcaaagaagaacaagtggatccagagtatgaaagctgcactgggctgcagacagagctg
agacaaagcagctga
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