Oryzias latipes (Japanese medaka): 101165993
Help
Entry
101165993 CDS
T02443
Symbol
rapgef6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X3
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
101165993 (rapgef6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
RasGEF_N
RA
PDZ
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
101165993
NCBI-ProteinID:
XP_011481472
UniProt:
A0A3B3IC67
LinkDB
All DBs
Position
14:complement(4765773..4885902)
Genome browser
AA seq
1715 aa
AA seq
DB search
MLSLERPFPQGCEFLRTHGDSDTYGDDGEATEVMKMTGAMEASFKLALKKPPSVRTAEDL
QTIYCHLYNMEVLSHLREHQLRSMCSSAKYERHEANHILFDPDSIATCWYILLSGSVFIK
EHMYLARCCFGKQLGGRRGCECITLEPSEMIVVDNGSEGNDCFLQREGSQRQSRRRFRRV
NPRGERELITDGQEPTGYNTLPADLSKMHLTDHAHQQAMHMPPSQSGCSIASDSGSSSLS
DIYQATESELGDVDLSGLPEAAVDSEEEEEEDEDLERASDALLGRDVVRECLEKDPADRH
DDDIEQLLEFMHQLPAFANMTMSVRRELCKVMVFEVVEQAGHVILRDKQELDNWRVILNG
AVEISYPDGREETLCMGNSFGISPSLEKQYMCGEVRTKGDDCQFVCIAKEDYWRILNHVE
KNTHKVEEEGEIVMVKEHRELDRSGTRKGHIVIKGTPERLIMHLVEEPSVVDPTYIEDFL
LTYRTFLSSPMEVGKKLLEWFQKDSLQDTVTRIVLLWVNNHFNDFEGDPAMTRFLEEFEK
HLEATKMKGHLRLLNIACAAKAKLRQITLQKASRESPLHFKLLGGSERGFGIFVEMVEEG
SKAAETGLKRGDQIMEINGQSFENISFSKALDILKNNTHLSLTVKTNIFVFKELHSRILN
EKKNGGPHIPKIQEKKGNRLSIPELPGDMEFATDHKATRKMKANTVSGGRNRIRKMLEKT
RFSILPPKPFNDGGIGQSQDDSMVGTKQCRHSVVMMPIPSNLSSSSPDLLQPASNVLDFS
NPAALGLYYIPDQVIRVFKADQQSCYIIISKDTTAKDVVAHAVNEFGLSAAPESYSLCEV
SVSPEGVTKQRRLPDQLSKLADRIQLNGRYYLKNNMDTETLCSDDDAQDLLKESQISLLQ
LSTMEVAAQLSMRDFELFRNIEPTEYVDDLFKLDSPLSRGNLKRFEEVMNQETFWVATEI
LREPNSVKRMRTIKHFIKIALHCKECKNFNSMFAIISGLDLPPVARLRSSWEKLPSKYAK
LFGDLQDVFDPSRNMAKYRNMLSSQSMQPPIIPLFPVIKKDLTFFHEGNDSSVDGLVNFE
KLRMIAKEIRHVVRMTSANMDPALMFRQRKKRWKSLGSLSQGSTNSNMLDVQGGAHKKRV
RRSSLLNAKKLYEDAQMARKVKQYLSNLTVETDEEKHQIMSLQCEPSYNTLSKNMNERRP
TKSNMSPVSLRSALQSGKTQNRVSQVLQVQVPLNPLRKKSLAKDNGTPTSSSPQVIKKPP
VNSDDWVTKRPSEDTISNISSLHSSPSLSYQNSPLKAGLAKSHNSSQMNLSGSSSSLTSD
ASTKTGTVSLRSFGIGYSLLPPGKADNLSDSSHSEISSRSSICSVDSVPAHGSDERCGRT
CTASSTMAASTTTGAAVAESSAALHAHVNADYSQPSTSSSLLARGHPPRACNFTPSLSTE
ELTPDLTSLDSVADSGRGSWTSCSSNSHESFQSYPTSSCRPWDHGIYGHPLSLPHTHLGS
FKHPARPVAEAEAARPAWAGEDPRQPSRDSGSDRSAPQSWASSSSISDNYEGNYGTVKRR
IPEHPSSPANEEGAQSTDSAYKTVTSSTEKGLIVYCVTSPTKDERYRAPPPTPPGYQGLA
LGDLGLSEGVVGGPGGLVPRPPHLKPPDYSVAVQRSRLLQSPGAADGLAEARRAQLQHQD
SRTSISKQHLHRPPSVCCPSQDLADSEDDEQVSAV
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcctggagagaccgtttccacagggatgtgagtttctccggacacacggtgac
tcggacacgtacggtgacgacggtgaagctaccgaagttatgaaaatgacgggggccatg
gaagcttctttcaagctggcattgaagaagcccccgtcggttcggacggcagaggacctg
caaaccatctactgccacctgtacaacatggaggtcctgtctcatctcagggaacatcag
ctcaggtcgatgtgctcctctgccaagtatgagagacatgaggctaaccacatcctgttt
gacccagacagcattgcgacctgttggtacatcctactctcaggctcggtcttcattaag
gagcatatgtatctggcacggtgctgttttggcaagcagttggggggcagacgtggctgt
gaatgcatcactttggaaccatcagaaatgattgtggtggataacggcagcgaagggaac
gactgctttctgcaaagagaagggtcccaacggcagtccaggcggcgcttcaggagggtc
aaccctcgtggagagcgagaacttatcacagacggccaggagcccaccggctacaacaca
cttcctgctgacctcagtaagatgcacctgacagaccacgcccaccagcaggcaatgcac
atgcctcccagccaatcaggatgcagcatcgccagtgattcagggagcagcagtctatca
gatatttatcaggccacggaaagtgagctgggagacgtggatctgtctggacttccagag
gcagctgtagacagcgaggaagaagaggaggaagatgaagatctggagagagcttcggac
gctcttcttggacgagatgtcgtcagagagtgtctggaaaaagatccagctgaccggcac
gatgacgacattgaacaactgctggagttcatgcaccagctgccagcgtttgccaacatg
accatgtctgtccggagggagctgtgcaaggtcatggtctttgaggtggtggagcaggct
ggccatgtcatactacgcgacaaacaagagctcgacaactggcgtgtcatcctaaatgga
gccgtggagataagctacccagatggaagagaagaaactctctgcatgggaaacagcttc
ggcatctctccatcgctggaaaaacaatacatgtgtggagaggttcgcaccaagggcgat
gactgccagtttgtctgcatcgctaaggaggactactggcgtatcctcaaccatgttgag
aagaacacgcacaaggtggaggaggagggggagatcgtgatggtgaaggagcaccgggag
ctcgaccgcagtgggaccaggaaaggacacatcgtgatcaagggaaccccagagcgtctg
atcatgcatctggtggaggaaccatcagttgtggaccctacctacattgaggatttcttg
ctgacctacagaacctttctttcaagtcctatggaggttggaaagaaacttctggagtgg
tttcagaaggacagccttcaggacacggtaaccagaatcgttctgctgtgggtcaacaac
cacttcaacgactttgagggcgacccagcgatgacgcgcttcctagaggagtttgagaaa
catctagaagctacaaaaatgaagggccatttgaggctgctaaacattgcctgtgcagcc
aaggccaagctgagacagatcactctgcagaaggcgtcccgcgagtcgcctctccacttt
aaactgctgggcggcagcgagagaggatttggcatctttgtggagatggtggaggaggga
agcaaggctgcagagaccgggctcaaacgaggagatcagatcatggagatcaatggacaa
agctttgagaacatctccttctccaaggctttagacatcctgaaaaacaacacacacctg
tctcttactgtcaaaacgaatatatttgtcttcaaagagctccacagcagaatcctgaat
gagaaaaagaacggcggcccccatattcccaaaattcaggagaaaaaaggcaaccgctta
tccatccctgagcttccaggagacatggagtttgccacagaccacaaggccactcgcaaa
atgaaggccaacactgtgtcaggaggacggaaccggatcaggaagatgctggagaaaact
cgcttcagcatacttccacctaaacctttcaatgatggtggcattggtcagtctcaggat
gacagcatggtgggtaccaagcagtgtcgccacagtgtggtcatgatgccaattccaagc
aacctgtcgtccagcagtcctgacctcctgcagccggcgtccaacgtccttgacttctcc
aaccctgctgctttgggactttactacattccagaccaggttatccgggtgttcaaggca
gaccagcagagctgctacatcatcatcagcaaggacaccactgccaaggatgttgttgcc
cacgctgtcaacgagtttggcttgtctgcagcccccgaaagctattccttatgcgaggtg
tctgtcagtccagagggagtaacaaaacagcgacgtctaccagaccaactctccaaacta
gccgaccggattcagctcaacggcaggtactacctaaagaacaacatggacactgagacg
ttatgttcagacgatgacgctcaggatcttctcaaagagagtcagatctccctgctgcag
ctcagcaccatggaggtcgctgcccagctttccatgagagactttgagctcttccgcaac
attgagcccacagagtatgtggacgacctctttaagctggactcccctctgagtcgtggg
aacctgaagcgctttgaggaggtgatgaatcaggagaccttctgggtcgccacagagatt
ttaagagagccaaactctgtgaagaggatgaggaccatcaagcacttcattaagatcgct
ctgcactgcaaagagtgcaagaacttcaactccatgtttgccatcatcagcgggctggac
ctgccgccagtggctcggctgcggagctcttgggagaaattgcccagtaaatatgcaaag
ctctttggggacctgcaggacgtcttcgacccgtccaggaacatggccaagtatcgcaac
atgctgagcagccagagcatgcagccgcccatcatcccactgttcccagtgatcaagaag
gacctgactttctttcatgaaggcaatgactccagtgtcgatggcctcgtgaactttgag
aagctgagaatgatcgccaaggagatcagacacgtggtgcgcatgacctctgcaaacatg
gaccctgccctcatgttcagacagaggaagaagaggtggaagagtttagggtctttgagt
caaggcagcaccaactccaatatgttggatgtccagggcggcgcacacaagaagcgagtg
cgccgcagctcgcttctgaatgccaagaaactgtatgaagatgctcagatggccagaaag
gtgaagcagtacctttccaacctcactgttgagacagatgaggagaaacaccaaatcatg
tccctgcagtgcgagccgtcttacaacaccttgagtaagaacatgaacgagaggcgcccc
actaagtcgaacatgtctccggtgtctcttcggtcagctctgcagtccgggaaaactcag
aaccgagtgtcccaagtccttcaggtccaggttccactgaaccctctacggaagaagagt
ctggctaaagacaatgggacacccacctccagctcccctcaggtgataaagaaacctcca
gtgaactcagatgactgggtcacaaagagaccgtcagaggacaccatctccaacatctca
tctcttcactccagcccctccttgtcttatcagaattcacctctaaaagcaggtttggca
aagtcccacaattccagtcagatgaacttatctggatcttcatcgtcgctgacgagcgac
gccagcacaaagaccggcaccgtcagtctgcgaagcttcggaataggctactcccttctt
ccacctggaaaagcagacaacctctcagactcgagtcacagcgagatctcctctcgctcc
agcatctgttcagtggactcggtgccggcccacgggtccgatgagcgatgcggcagaacc
tgtacggcctcttccaccatggctgcatctactacaacaggtgcagcagttgctgagagc
tccgcggcgttgcatgcacacgtaaatgctgattacagtcagcccagcacgagttcttca
ttgttagcgcgaggacacccaccaagagcttgcaacttcaccccttccctctcgacggag
gagctgacgccagacctcacctctctggactcggtagcagacagcggccgaggcagctgg
acttcctgctcctccaactcccacgagtccttccagagctaccccacctcctcctgtcga
ccctgggaccacggcatctacggccacccgctctctctgccgcacacacacttgggcagc
ttcaagcacccggccaggccagtggcagaggcggaggccgccaggcctgcgtgggccggc
gaggaccctaggcagccctccagagactccggctcagatcgctcggctccgcagagctgg
gcgtctagcagctccatatcagacaactatgaggggaattatgggacagtaaagaggcga
atcccggagcacccctcctcacctgccaacgaggaaggagcgcaaagcacagactccgcc
tacaaaacggtgacatcaagcacagaaaaaggcctgatagtgtactgtgtcacctccccc
acaaaggatgagcgttaccgagctccccctcccacccctccaggctaccagggtctggct
ttgggggatctcggcctcagcgaaggagttgtgggagggccgggaggtctggtcccccgg
cctcctcacctcaaacctccagactacagcgtggctgtgcagaggagcagactcctgcag
agccccggagcggctgacggtctggcggaggcacgaagggctcagctccagcaccaagac
tcccggacctccatctccaaacagcatctccacagaccccccagcgtctgctgcccgtct
caggacctggctgacagtgaggatgatgaacaagtttcagcagtgtaa
DBGET
integrated database retrieval system
