Oryzias latipes (Japanese medaka): 101166408
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Entry
101166408 CDS
T02443
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101166408 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101166408 (smg6)
03032 DNA replication proteins [BR:
ola03032
]
101166408 (smg6)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101166408 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
101166408 (smg6)
DNA replication proteins [BR:
ola03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
101166408 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
DUF1455
Motif
Other DBs
NCBI-GeneID:
101166408
NCBI-ProteinID:
XP_011481586
UniProt:
H2LDV9
LinkDB
All DBs
Position
14:complement(9186746..9203024)
Genome browser
AA seq
1641 aa
AA seq
DB search
MANELDRVRISAAELRAEALNSSNITECVAVEHQNHQVQKQHKKREGKRPDLQRYQPAAG
SGRSALDSEEGETPPNHLLPPDSSKLDQSIGNEKKGDAGKVSNRQGCTDCEPSTKKVEES
TMKGDGSNNKNCREGSRSQPKGDAFNEEHQEVDKIAKTVKKARKPDREFYQPGTRRNIQG
KDLNVGRDQEIPPTRKPEQNPEPQSQLSAKAREGNKDKNIQKQRGIDRAKSGQNVDITSK
CSEVNREHQSRDVEKPVLPIDSSVKNITSSAEKMSIKEKDKTKGVGKASGESTYRGRQMT
DKEKKGRPTETNDDAKKGEKGNHRTKEVEREKEKKWESRGENESSRRKNNSGRTEKDRNK
KVLETDGKVSNKSSETKQSKGRDNRKQVRDRKDSSTSTDAGKQDKAQKDLDRSERHGSSA
IAIAGASKRYSRSDIRHSRNRTYSSSSASSVTSQDGPGRGLNPEHNTDRMDYRDGRRSHL
QSWTNSRHSSSESLERSDMSERAEERRKRRRRGGEGKKNAENHGEDRNTPKPNKGRGLIT
VKSYEEKKHLSGQSQSRETQNHKQGLVPRGRGGGILVLPARTDISNSPEIGQRLFSGGLR
GGASYRSRGGRGGMRRLWDPNNPDQKPALSNTQPSLHSSLKHPVYLQSGPVHGQLHFLDT
DDEVAGSPPIQGEHFQPRQAAAMAYYKFQSSDNPYCYPMATSNLHGPSTPTSHSFPYAYS
MAPYQMPQSNGMYASHGAAQFSGSYRGAGYPQSGADSSLNIEETEQQTRGELGRMLRAAD
AHEVQLSNLLSRDRVSADGLDRMAQLRADLLGLYEQVILTDIEFSDSQNVDQALWKNVFY
QVIERFRQLLKDPSYDNTPHIRNMLLTLLDEGAQFFDALLQKVQTVYQFTLEDYMDGMAI
RARPLRKTVKYALISAQRCMICQGDIARYREQATDSANYGKARSWYLKAQQIAPKNGRPY
NQLALLAIYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRKAEQLEQRRRQENE
GGSQGPAVRGRRKDEESSRVEIWIRPNGQTATPFNKRGGSESSRDSEQDGELGSLSATDL
KKRFILSFLHAHGKLFTKVGMESFPGVASRVIQEFKTLLQHGASLLGSTNILQIITINMF
AVHNSQSKGEEGETRSVLQEQSTALGLGMFALLVQRCTELLKEIPAESIQVADGEEEEEK
TGEPEGMVRVSAFPLDLRELLPGIKVWSDWMLGHPHQWNPPPCGIDCSPDVWQYLANLCN
VLAHVDHEEVLLYKVDSDEGENDEELTVLQLKEDKLLAGFVPLLAAPQEPCYIDKHTDEA
IAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYISVATSASNNQSEDARNRQDSLTENEQ
ADVILEAESSLSASEEEEEDFDGGGHSGNDIRQLKARHHALTNKLAQRQKRLDKIQAVLQ
PGGQLELEIRPLFLVPDTNGFIDHLEGLKKVLHCGSYIIVVPLIVITELDGLAKGQDTFG
GGLGSRGRSTGSRGNYNSAAHVRAVQDKARLAVAFLEKGFEAREPCLRALTSRGNQLESI
AFRSEDTSGQQGNNDDVILSCCLHYCKDKAKDFMPPQKNGTVRLQREVVLLTDDRNLRVK
ALTRNVPVRDIPSFLSWAKVG
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaactggacagagtacgaatctcagccgcggaactacgagctgaagctttg
aattcatccaatattactgagtgtgttgcagtggagcatcaaaaccatcaggttcaaaaa
caacacaagaagcgtgaaggcaaacgtccggatcttcagcgttaccagcctgcagctgga
agtggacgctctgccctggatagtgaggaaggagaaactcctccaaaccacctccttcca
cccgactcttcaaaactggatcagtcaatcgggaatgaaaagaaaggagacgcgggaaaa
gtctcaaacagacaagggtgcactgattgtgaacctagtaccaaaaaagtggaagaaagc
actatgaaaggcgatggcagtaataataaaaactgcagagagggcagccggtcacagcct
aaaggagatgcgtttaatgaagaacatcaagaagtagacaagattgctaagactgtgaag
aaagctcgaaaaccagacagagaattttatcaacccgggactcgcagaaatattcaggga
aaggacttaaatgttggaagagatcaagaaatccctccaactaggaagcctgagcaaaac
cctgagcctcagtcccagctgagtgcaaaagcaagagaagggaacaaagataaaaatata
cagaaacagagaggtatagatagagctaagtcgggacagaatgtggatattacttccaaa
tgtagcgaggtaaatagagagcatcaaagccgagatgtagaaaagcctgtgttacccatc
gactcatctgttaagaacattacaagcagcgctgaaaaaatgagcataaaagagaaagat
aaaaccaagggcgtaggcaaagccagcggagagtcgacgtacaggggacgacaaatgact
gataaagaaaagaaaggtcgacccactgaaacaaacgatgatgcaaaaaagggagagaag
ggtaaccacaggacgaaggaggtggagagagaaaaggaaaagaagtgggaatccagagga
gaaaatgagagcagcagacgaaaaaacaattcaggaaggacggagaaggacagaaacaag
aaagtattggaaacagatggaaaagtatcgaataaatcatctgagacaaagcaaagtaag
ggaagagataatcgcaaacaagtcagggacagaaaagacagcagcacctccactgatgct
gggaagcaggacaaggcacaaaaagatctagaccgaagtgagagacatggatccagtgcg
attgctatagctggagcatcaaaacgctattctagatcagatattcgccactcacgaaac
agaacctacagcagtagctcggccagcagcgtgacgagccaagacggtcctggccgggga
ctgaaccctgagcacaatacagacaggatggactaccgtgatgggcgcagaagccactta
caaagttggacaaacagtaggcattcatcatcagaatctttggaaaggagcgacatgagt
gagagggcagaggaaaggaggaaaaggcgaagaagagggggagaaggaaaaaagaatgca
gaaaaccatggggaggacaggaacacaccgaagccaaacaaaggtagagggctgataact
gtaaagtcttatgaagaaaaaaagcatttgagtggccagtctcagagccgggagacgcag
aaccacaagcaaggtttggttcctcgcggcagaggtggcggcatcctggtgcttcctgct
cgcaccgacatctccaattcacccgagattggacaacgccttttttccggtggacttcga
ggaggggcgtcttacaggagcagaggaggtagaggaggcatgaggcgactgtgggatcca
aacaacccagatcagaaacctgccctttctaacactcagccctcactccattcttccctg
aaacatcctgtatatcttcagagtggacctgttcacgggcagcttcactttctagacaca
gatgatgaggtagcgggcagtcctccgatccagggagaacatttccaaccccggcaggct
gctgctatggcttactacaaattccaaagctctgataacccctattgctaccccatggcc
accagtaatcttcatggtcccagcacccccacaagtcacagctttccatatgcttatagt
atggcgccataccaaatgcctcaatctaatggtatgtatgcgagccatggtgctgctcag
ttcagtggaagctacaggggagcaggatatcctcagtcaggtgcggatagtagtctgaat
attgaagagacagagcagcaaaccagaggggaactggggaggatgttgagggctgctgat
gcacacgaggtccaactgagtaacctgctgtcgagggacagagtgagtgctgatggattg
gatcgtatggcccagctcagagctgaccttttggggctgtacgagcaagtcatcctgaca
gacatcgaattctccgactctcagaacgtggatcaggctttgtggaagaatgtgttctat
caagtgatcgagcgtttccggcagctccttaaggacccctcctacgacaacaccccccac
atcaggaacatgctgctcactctcctagacgagggggcacaattctttgatgcacttctt
cagaaggtgcagacagtttaccagtttacgctagaagattatatggacgggatggccatc
agggctcggccattacgcaaaacggtgaagtatgccctcataagtgctcagagatgcatg
atttgtcagggggatatagcacgttacagggaacaagccacagattctgcaaactatggc
aaagctcgcagctggtatctaaaagctcaacagattgcccccaaaaatggacgaccgtat
aaccagctggctcttttagcaatctacacaaagcggaaattagatgccgtttattactac
atgcgcagtttggctgcttctaaccccatcttgacagcaaaagaaagcctgatgagcctg
tttgaggaagctaagcgtaaggcagagcagctggagcaaaggagaagacaggaaaatgaa
gggggctctcagggtccagcagtaagagggagaagaaaagacgaagagagctcacgtgtg
gagatttggatccgtcctaatggccaaacagcaaccccctttaacaaaagagggggcagt
gagtccagcagagactcggagcaggacggagagctgggcagtctaagtgctactgatcta
aaaaagaggtttattctgagttttcttcacgctcatgggaagcttttcacaaaagtaggc
atggagtcctttcctggcgtcgcgagccgcgtcattcaggagtttaaaacgctgctgcag
catggcgcctctctgctgggaagcaccaacatattgcaaatcatcacaatcaacatgttt
gccgttcacaactctcaaagcaaaggcgaggaaggagaaacccgatccgttcttcaagaa
caaagcactgcgctggggcttggcatgtttgcactgctggtgcagcgctgcacagaactc
cttaaagagatccctgcagaatctattcaggtggcagatggagaggaggaggaggagaaa
acgggggagccggaggggatggtcagagtctctgccttccctttggatctaagggaactg
ctgccaggcatcaaagtctggtctgactggatgttaggacacccacaccaatggaaccca
ccaccatgcggtatagattgcagccctgatgtttggcagtacctggctaacttgtgtaat
gttctggcacacgtggaccatgaggaagtgctgctgtacaaggttgatagcgacgaaggg
gaaaatgacgaggagttgacagttcttcagttgaaggaagacaagctgctcgctggcttt
gtcccgctgttagccgcaccacaagagccctgttacatagacaaacacactgatgaggca
atagcagcagactgcaagagagtgacggtactgaagtactttctagaggctttgtgtgga
caagaagagcctttattggcctttaagggaggaaagtacatctctgtagcaacttctgct
tcgaataaccagtcagaagatgcaagaaacagacaggactctttaacagaaaatgagcag
gctgatgtgatactggaggcagagtcctctctttctgcatcagaagaagaggaagaagac
tttgatggagggggacacagtggaaatgatatccgacaactgaaggctcgacatcatgcc
ctcactaacaaactggcacagcgacagaagcgtttggacaaaatacaggctgtgctgcag
cctggtggtcagctggaactggagattcggcctctgtttttggtccctgataccaacggg
ttcattgatcatttagagggcctgaagaaagtacttcattgtggaagttatataatagtt
gtgccattaattgtgattacagagttggatggcttggccaaaggtcaggacacttttggt
ggaggactgggttcacgtgggcgcagcaccggcagtcgtggcaactacaacagtgcagcc
cacgtgcgggcggtgcaggacaaggctcgcttagctgtggctttcctagagaagggattc
gaagccagggaaccgtgcctcagagccctgacgagccgaggaaatcagctggagtccatt
gctttcagaagtgaagatacttctggacagcagggtaacaatgacgacgtcattttatcc
tgttgtcttcattactgcaaagacaaggcgaaagatttcatgcctccccagaaaaatggg
acagtgagacttcagagagaggtggtgctcctgacagatgatcgcaatctgcgagtcaaa
gcattgacacgcaacgtccctgtgcgtgacattccctccttcctcagctgggccaaagtg
ggctga
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integrated database retrieval system
