Oryzias latipes (Japanese medaka): 101169488
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Entry
101169488 CDS
T02443
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ola01009
]
101169488
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ola04040
]
101169488
Protein phosphatases and associated proteins [BR:
ola01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101169488
Ion channels [BR:
ola04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
101169488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
101169488
NCBI-ProteinID:
XP_023804759
LinkDB
All DBs
Position
18:4185332..4461089
Genome browser
AA seq
1089 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSGLLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDSDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRHHWAVKLVTCFIIGLLFPVFSMIYLLAPKSAL
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTVVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNIISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSVWYLLMWLHNRLCRRGQPPGEESHKCENLREFTERHADSLIQNQHYQ
EVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRNYSSS
SETTKDDGAMASEDDSELGDGGEGGGGGSVGIQKSKSVTFTNPVADNRKSTLGVSALVRS
ISGMTKTERKDKAELEEGSGWGEEEEEEEGKPKSNGLKTTVLPPSSTSVLPSPSSSVSSS
LTSSLARTRSRLQRLSAPSSKTDSFKHLSYLFSRSKRRAPPTPLPLQSPPSYTISDGLLC
PLGSHSHSDFGLTDVTRSDTHLNEVGRSVDNPSFSPRRTNGRDSLLTLPLPPPCPCQSLH
CASNMSESSSRLLDSSEDVFLGGGGEGALDDHGDGRGGMRMMLGGWVGPCDDVMEDSCEV
IEDSVTTQL
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacacagctgtactacaagaaggcgacgtactcgccgtaccgcgaccgc
atcccgctgcagatcgtgcgggcggaggtggagctttctgcagaggagcgggcctacctc
actgcagtcgaaaaaggtgactatgccggggtgaagcacgccctccgcgaggccgaggtc
tactacaacatggacgtgaactgtctggacccgctgggtcgcagcgggctcctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgctggaccacggcatccacacgggc
gacgccctgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtca
cacaggaggcccagcggggagaagcaggtcccctccctgatgatggacagtcagttttca
gagttcacgccggacatcactcccatcatgcttgctgctcacaccaacaattacgagatc
atcaagctgctggtccagagaaaggtcaccatcccgaggcctcaccaaatacgatgcgac
tgtgtcgagtgtgtgtccagttcagaggtcgacagcctgcgtcattcccgctcccgactc
aacatctacaaggctctggcctcgccgtccctcatcgcgctgtccagtgaagaccccatc
ctcaccgccttcagactggggtgggagctcaaagagctcagcaaggtggaaaacgagttt
cgtcaggagtacgaggagctttctcagcagtgcaaacgtttcgccaaggaccttctggat
caggccagaagttcaagagagctggagaccatcctgaaccacagggacagtgaccagagc
gaggagctggacccccggcagtgccacgacctggccaagctcaagctggccatcaagtat
caccaaaaagagtttgtggcgcagccgaactgccagcagctgctggccacgctgtggtac
gacggcttccccggctggaggcggcaccactgggccgtcaaactggtcacatgtttcatc
atcggactgttgtttcctgttttctccatgatctacctgttggctccaaagagcgcgctg
gggcgattcattaagaagcccttcatcaagttcatctgtcacacagcgtcctacctgacc
ttcctcttcctcctgctgctggcctcgcagcacattgcccgcaccaacctgcacatgcag
gggcccccgcccactgttgtggagtggatgatccttccgtgggtgctgggcttcatctgg
gccgagattaaagagatgtgggacggcggattcacggaatacatccacgactggtggaac
ctgatggactttgccatgaactctctgtacctggccaccatttctctgaagatcgtggcg
tacgtgaagtataactcctctcgtcccagagaggagtgggagatgtggcacccgacgcta
atagctgaggctttgttcgccatcgccaacatcttcagctcgctccgactcatctcgctc
ttcaccgctaactcccacctcgggcctctgcagatctcactggggaggatgctgctcgac
atcctcaagtttctcttcatttactgtctggtcctgctggcattcgccaacggtctcaac
cagctttatttctactacgagaccaaggcgtcagaggaacccaacaactgtaagggcatc
cgctgcgagaggcagaacaacgcattctcaacgttgtttgagactctccagtccctcttc
tggtccatatttgggctgctgaacctctatgtgaccaacgtgaaggcccgccacgagttc
accgagtttgtgggggcgaccatgtttgggacgtacaacatcatctctctggtggttctg
ctgaacatgctgatcgccatgatgaacaactcctaccagctcattgccgatcacgccgac
atcgagtggaagtttgcgcgcaccaagctgtggatgagttacttcgacgagggcggcacg
ctgccgcccccgttcaacatcatccccagccccaagtccgtgtggtacctgctgatgtgg
cttcacaacaggctgtgccgcagaggacagccgcccggggaggaatcgcacaaatgtgaa
aacctgcgcgagttcaccgagcgtcatgctgacagcctgatccagaatcagcattaccag
gaagtgatccggaatctggtgaagaggtatgtggctgccatgattcgcagcgccaagacg
gacgaagggctgacggaagaaaacttcaaggaattaaaacaagacatctctagttttcgc
tacgaagttctggatctcctgggcaaccggcgtcctcccagaaggaactactcctcctcc
agcgagacgacaaaagacgatggcgccatggcatcggaagatgacagtgaattgggtgat
ggcggcgaaggaggaggaggagggagtgtgggcatccagaagtcaaagagcgtcaccttc
accaacccagtggcggacaacagaaagtccacgcttggcgtgtcggcgctggtgcgctcc
atatcgggaatgacaaagactgaaagaaaggataaggcggagctggaggagggcagtggc
tggggggaggaggaggaggaagaggagggtaaaccaaagagtaacgggctgaagacgact
gtcctccctccgtcttccacctctgtcctcccttcgccatcttcatcagtctcctcttcg
ctcacgtcatcactggctcgcacgaggagccggctccagcgcctctcggctccgagctca
aagacagactctttcaaacacctctcctacttgttctctcggtccaagcgcagagcccca
cccacgccactccccctacagtccccgccctcctacaccatttctgacgggttgctctgc
cccttagggagccacagccactccgactttggactcaccgatgtgacgagaagtgacacg
cacctgaacgaggtgggccgctcggtcgacaacccatcgttctcgcctcggagaacgaat
gggcgagactcgctgctgaccctgcccctcccacccccgtgcccctgccaatccctgcac
tgtgcttccaacatgtctgagtccagctcgcgcctcctggactccagcgaggacgttttc
ctgggtggaggcggggaaggggcgctggacgaccacggggatggaagagggggcatgcgg
atgatgttgggtgggtgggtgggaccctgtgatgatgtcatggaggacagctgcgaggtc
atagaggactctgtcacaacgcaactatag
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