Oryzias latipes (Japanese medaka): 101173247
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Entry
101173247 CDS
T02443
Symbol
pcdh15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ola03037
]
101173247 (pcdh15)
04515 Cell adhesion molecules [BR:
ola04515
]
101173247 (pcdh15)
Cilium and associated proteins [BR:
ola03037
]
Primary cilia and associated proteins
USH complex and associated proteins
101173247 (pcdh15)
Cell adhesion molecules [BR:
ola04515
]
Cadherins
Protocadherins
101173247 (pcdh15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
GHMP_kinases_N
Acyl-CoA_dh_M
DUF4776
Motif
Other DBs
NCBI-GeneID:
101173247
NCBI-ProteinID:
XP_023818757
LinkDB
All DBs
Position
15:complement(20292293..20530428)
Genome browser
AA seq
1973 aa
AA seq
DB search
MQRGRRLVRWIGTAMAILSLLSHSRGQDVKDWQYEECKLSRPGPPATIVTIDEESPNGTV
LVENMQIYGNAHGPGRTISLTLLDNYDYWVILEPARQRLYLNSTGRRLDRDPPSSITSIV
VQIQCYNELVGTVIYHEVRIVVRDKNDNAPRFQHPHYYVSVNELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYSILYNPGNPESNRTVRVGNTLSGTILLANRLNYQEITRYLVLIQAS
DRAPYPPNRLTATTTLTVDVLDGDNLGPMFLPCILVNNTRDCTPVTYRTAIPELTEPRKL
NPLNVTPPIGAVDMDRNIQPPSDRPGILYSILVGQPATYAEYFSLNRSTAELLVLKPISR
DFYQRFTLVIKAEQDNGHPLPAYADLIVEILDENNQAPYFQFATYQGYVSESSPVGTTIS
ASANLTVPLGIVALDNDIEELAPGDTPTKDPQLKITLNDYITVFGLTPTGITRFLRLLEP
VDRETKMSYTFMMIASDGVQQSIPVTVNILVIDANDNTPTFTKVSYNVEVFTNMQPGETV
LQLTATDADEGLNGLVTYEILAGGQGDFIISNRTGRISVAPGVTLFVGRSYALTVRASDS
APENQRRSSITTVYIEVLPPNNQSPPRFPLSTYNLEISEAMRVGAILLNVQATDRENDPI
RYRIVSGDSQKVFNLSETIGLLLLSKPLDRETTDQYLLIITASDGNPGGISTATVSVVVT
DVNDNDPKFDPTINTNFTVQEEKANLFVGQVRATDPDAGVNGQVFYRIVDHPNLFVITSN
GSIYTKVPLDRESKNQYDLIVEASDGAVDPRRTTLVVSVQVLDIDDNSPVFSQKIYVVNV
PENTPVGTVVLKLSAVDADLFSNVTYRMKTESARQLFSLNSITGELAVLQTLDFEGLAAM
GMGESFTFQVEAVDQGGVMPPGQATVTIQIKDMNDFSPIFSQDLYKGMVAPNAEKGTVIT
TVFAEDQDPPGTPASIVRYRVDHERSPYSGSIFDVEEVTGRVITKVNLNEEPSVTFKLFI
IAFDNGEPVKTNSTLVEITVLQPSRIPIFTEEEYTFSPVRELAPIGTPVGTIFAAAINQT
IFYSIVGGNELGHFKVNNRTGVISTAKPLDYENVTSYILRVQADSLVVVMSNLRVPSKTN
TAKVFIEVQDENDHAPVFSRQLYIGGVTEDTKIFSSVLKIVATDKDTGNYSAMAYRLIIP
PAAEGQDSFVIETYTGVIKSAIMFRNMRRSYFKFEVIATDDYGKGLSSSAQVVVSVVNAL
DMQVVVSTVPPSLVEEKKEELIRILERHVQDQIPGAKIVVESIGPRRHGDGFELEDYSKS
DLIVYAIDPLTNRAIAPQELFKFLDGNVLEINKEFQPYLGEGGRVLEIRSPNIVASVKKA
AQAVGYTEGALLALAIIIILCCIPAILIVMVTYKQFKERQAECAKTARIQKALPPGGKAA
PAAAPTTNLYEELGDSSILQAKKWDIEEANHQRIFSSLARRTIAAHSNGALCVNLPKSES
NVTHLSDGNPLITHNPVYDGNFDSYGMGENPLEKWFSFSPSHSTGSACGWSMPARIHGAP
HSYEGPRRQGLLDQSEWELQLLQRATRDKQGSKSSVSLSLSECAENKLSVREQARQFEQQ
AFQQEALKQNREFCGSLSSVLVRDMESNDMLELTSETLRSIMDYPHSPTSVGRDVPPSII
ISKADESWHLSSQRPTPPVLRKFSSSISNYMTVQPCQITVEIIPDPPDNPPPPPPAPPHL
PRPPSPPTSPAPLQPPTPPSSPPPSPPSSPPAPPSHKLQCTPPSSPSINKLLAPPPPPPP
PPPLLLLPPSPSSVQLRPVVQFVPTDLPPVSTLRPVSERKHPPRLTSSETEAGKRKELKG
ILKNIQNLADIERSVANLYSQVDKNCKVPKFNKKPQVAEESANKQQRSDSGDEQSSPRTT
TDSSFEFQSSQTSLNFAETGASQLNMAEEQTSQFSSLNTAELSEHSSSQSTVF
NT seq
5922 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagggaggcggctcgtcagatggatcgggacagcaatggcaatcctctcgttg
cttagtcacagtcggggccaggatgtcaaagactggcagtatgaggagtgtaagctgtcc
cgacctggccccccagcaactatagtgaccatcgatgaggaaagccccaacggaacggta
ttggtggagaacatgcagatctatggcaatgcccacggtccaggcagaaccatctcattg
acactgctcgacaactatgattactgggttatattagaaccagcaaggcagagactctac
ctcaacagcactgggcgcaggttggatagagatccccccagctctatcacctcgattgtt
gtccagatccagtgctacaatgagctggttggcacagtcatttaccacgaggttcggatt
gttgtgagagataagaatgacaatgcccctcgctttcagcacccacactactatgtctcg
gtaaatgagctcacaccagttggaacaaccattttcactggcttctcaggagataacggt
gccacggacattgacgatgggccaaatggacagatagagtacagcatcctttacaatcca
gggaatccggaatccaacaggacagtgagagttggaaacactctttcaggaaccatcctt
ctggcaaacagactaaactaccaggagataactcgctatctggttttgatccaagccagt
gatcgtgctccttacccccccaacagattaacagcaaccacaactttgactgtggacgtc
ctggatggagacaacctgggccccatgtttctaccttgtattttagtgaacaacactcgg
gactgcactcctgtcacttaccgcactgctataccagagctcactgaaccgagaaagcta
aaccccctgaatgtgactccacccatcggggccgtggacatggacagaaatatacagccc
ccttcagatcgacctggcatcctctactccatcctggttggccagccagccacatacgca
gagtatttctccttgaacagaagcactgcagagctgctagttctaaagccaattagcagg
gacttctatcagagattcacactcgtcatcaaggccgaacaggacaatggtcaccctctg
ccagcctacgctgacctcattgttgaaatcctcgatgaaaacaaccaggcgccatacttc
cagtttgcaacctatcagggttacgtgagcgagtcctcccctgtgggaacaacgatctca
gccagtgccaacctcactgtcccattgggaatcgttgctttggataatgacatagaagag
cttgctcctggtgatacacctacgaaagaccctcagttgaagatcaccctgaatgattac
atcacagtctttggtctgactccgacgggaatcacccgcttcttgaggctcttggaacct
gtggaccgtgagacgaagatgtcctataccttcatgatgatagcatccgatggtgtccaa
cagagtatcccagtaactgtcaacatcctggttattgatgctaatgacaatacgccgacc
tttactaaagtgtcctacaacgttgaagtcttcaccaacatgcagccaggggagacagtg
ctacagttaacagccacagatgctgatgagggcctgaacggtctggtgacctatgagatt
ctggcaggcggccaaggagattttataattagtaatcgcactgggagaatctccgtggcg
cctggcgtcactttattcgtgggacgatcatatgcactgactgtcagagcgtctgacagt
gcacccgagaaccagagaaggagctccatcacaacagtctacattgaggttttgcccccg
aacaatcagagtcccccacgcttccccctctccacctacaacctggagattagtgaagca
atgagggttggagctattcttctcaatgtgcaggccactgacagagaaaatgatccgatc
aggtaccgcatcgtgagtggagactcccagaaggtcttcaacctctctgaaacgattggt
cttctccttctgagcaagcctctggatagagagaccactgatcagtaccttctgatcatc
actgcctcagacggaaacccaggagggatatccactgctacagtcagtgtagtcgtcacc
gatgtcaacgacaatgacccaaaatttgacccaacaatcaacactaattttactgtccaa
gaagaaaaggccaatttgtttgtaggacaagtcagggccacagacccagacgcaggagtt
aacggacaagttttctaccgcattgtggatcatcctaacttatttgtgatcacttccaat
ggaagcatttacactaaagtgccactagacagggagtccaagaaccagtatgacctgata
gtggaagcctcagatggagcggtggaccctcgacggacaacccttgttgtctccgtccag
gttttagacattgacgacaacagtccagtcttctcccagaaaatctatgtagtgaatgta
cctgaaaacacccctgtgggaactgtggttctcaaactaagtgcagtggatgcagacctc
ttctccaatgtcacataccgcatgaagacagaatctgccagacagctgttttctctgaac
tctatcacaggggagcttgctgttctgcagactctggactttgagggtctagcagctatg
ggcatgggagagtcttttacgtttcaggtggaagcagttgaccaaggaggggtaatgccc
cctggtcaagccacagtgacaatccaaatcaaggacatgaatgacttctcacccatcttc
agtcaggacctgtataaaggcatggtggcacctaatgcagagaaaggaacagtcatcacc
actgtttttgctgaagaccaagacccaccaggcactccagcaagtatcgtccgctataga
gttgaccatgaaaggtcaccctacagtggaagcatctttgatgtggaagaggtgactgga
agagtaataaccaaggtcaacctcaatgaagagcccagtgtcacctttaagctttttatc
atagcctttgataatggggagccagtgaagactaacagcaccctggttgagatcactgtc
cttcagccatctcgcattccgatcttcactgaagaagagtacacgttttccccggtcaga
gagctggctccaattggtactccagtagggactatttttgctgctgctatcaaccaaacc
atcttctactctattgtaggaggaaatgaactaggtcactttaaagtaaacaaccgtaca
ggtgtcatctcaacagccaagcctttggattatgaaaatgtgaccagttacatcctcagg
gtccaggcagactctttggtggtcgttatgtccaacctccgtgtgccctctaaaactaac
acagccaaggtgttcatagaggtgcaagatgagaatgaccacgctcccgtcttctccagg
cagctgtacattggtggtgtgacagaggacaccaagattttcagctctgttctcaagata
gtggccacagataaggacacaggaaattacagtgccatggcataccgtctgatcatcccc
cctgcagcagagggtcaggacagctttgtcattgagacctacacaggtgtcatcaagtca
gccatcatgtttcgaaacatgcgcaggtcctacttcaagtttgaagtcattgctacagac
gactatgggaaaggtctaagcagcagtgcccaggttgtggtttctgtagtcaacgccttg
gacatgcaggtggttgtgtccactgtccctccctctttagtcgaagagaaaaaggaggag
ctcattaggattctggagcggcatgtccaggaccagattccaggtgcaaagattgtcgtt
gagtctattggaccacgtcgtcatggtgatggctttgagctcgaagactacagtaaatca
gacctgattgtgtatgccattgacccgctcaccaacagggccattgcgccgcaggaacta
ttcaaatttcttgatggaaatgtgctggaaatcaataaagagttccagccttacctgggt
gagggtggccgcgtcctcgagatccgttctccaaacatcgtggccagcgtgaagaaggcc
gctcaggctgtgggctacacagagggggccttgctggccctcgcaatcatcattatcctt
tgctgcatccctgcaatcctcattgtcatggtcacctacaaacagtttaaagaacgtcag
gctgagtgtgccaaaactgccaggattcagaaggctttaccacctggagggaaggcagct
ccagcagctgctcctactactaacctctacgaagagctgggcgacagcagcatactgcag
gctaaaaagtgggacattgaggaggccaaccaccagaggatttttagttccctggcccgt
cgcaccattgcagcccacagcaacggagcgttgtgcgtcaacttgcccaaatctgaaagc
aacgtgacccacctatctgatggcaacccactcattacacacaaccctgtctatgatggt
aactttgacagctatggaatgggggagaatccactggaaaagtggttctctttttctcca
tcacactcgacggggtcggcgtgcggctggtcaatgcctgctcgcattcatggagccccg
cacagctacgaggggccaagaagacagggtcttctagaccaatctgaatgggagcttcag
ctactccaaagagccacaagagacaagcaagggtcaaaaagttcagtctcacttagcctg
agcgaatgcgcagagaataaattgtcagttcgtgagcaagcccggcagtttgagcagcag
gccttccagcaagaagccctcaagcaaaatagagagttctgcggctccctctcttctgtt
ctcgtcagagacatggagagcaatgacatgctggagttgacctcagaaaccctgcgctcc
atcatggattacccccacagtcctacatctgtgggcagggatgtgccccccagtattatc
atttctaaggctgatgagtcttggcacctgtccagccagagaccaaccccacccgttctg
agaaagttcagctcaagcatttccaactacatgacagtgcagccatgtcagatcaccgtg
gagatcataccagacccacctgacaacccccctccacctccccctgctcctccccatctg
ccgcgtccaccgtccccacccacatctcctgcacccctgcaaccaccaaccccaccctct
tctcctcctccgtctccgccttctagtcctcctgctccaccctcacataaactgcagtgt
acccctccttcctctccctctattaataaactgcttgctcccccacccccacccccaccc
ccaccacctcttcttcttcttcctccctcaccttccagcgttcagctacgcccagtagtc
cagttcgttccaaccgatttaccccctgtgtccacccttcgccctgtttcagaacgaaag
cacccccctcgtcttacctcatctgaaactgaggcggggaaaagaaaggagctcaaagga
atcctgaaaaacatccagaatctcgcagacattgagagatcagttgccaacctttacagc
caagtagacaaaaattgcaaggtgcccaagttcaacaagaaaccgcaagtggctgaggaa
tcagcgaacaaacaacaaaggtctgactcaggtgatgagcagagctcgccaagaacaaca
acagactccagctttgaattccaaagcagtcaaacaagtctgaactttgctgaaactgga
gcaagccaacttaacatggcagaagagcagacaagccaatttagcagcctgaacactgct
gagctcagtgaacactcttcctctcagtccactgtattttga
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