Horticoccus luteus: K0B96_07060
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Entry
K0B96_07060 CDS
T07405
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ole
Horticoccus luteus
Pathway
ole03030
DNA replication
ole03410
Base excision repair
ole03420
Nucleotide excision repair
ole03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ole00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0B96_07060 (ligA)
03410 Base excision repair
K0B96_07060 (ligA)
03420 Nucleotide excision repair
K0B96_07060 (ligA)
03430 Mismatch repair
K0B96_07060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ole03032
]
K0B96_07060 (ligA)
03400 DNA repair and recombination proteins [BR:
ole03400
]
K0B96_07060 (ligA)
Enzymes [BR:
ole01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K0B96_07060 (ligA)
DNA replication proteins [BR:
ole03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K0B96_07060 (ligA)
DNA repair and recombination proteins [BR:
ole03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K0B96_07060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0B96_07060 (ligA)
MMR (mismatch excision repair)
DNA ligase
K0B96_07060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0B96_07060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Zn_ribbon_NUD
BRCT_2
Nlig-Ia
RNA_ligase
zf-tcix
Plasmid_RAQPRD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QYM80361
UniProt:
A0A8F9TYJ2
LinkDB
All DBs
Position
1699070..1701091
Genome browser
AA seq
673 aa
AA seq
DB search
MTSAEAQQRLDELRAEIARHDELYHRQAKPEISDFDYDRLKRELADLEAAWPALGGDNSP
SRAVGDDRTAGFKTYRHRERMMSLDNTYSAEELREFHDRLTRDLERDGLEFVVEPKIDGL
AVSLTFAKGKLVRAVTRGNGVEGDDITANALTIRSLPRELKRGPDAPVPDVIEIRGEIYL
TTAEFQRINRQREEEGEPVYANPRNLAAGTIKQLDAREVGQRKLEIVLYGRGYLEPVAAL
PETQTQFHGWVKAWGLPTVEKFWTVQGADAVLGAVQELGKLRESFAYATDGAVVKLDAVA
LQRRAGSTSKSPRWAMAYKFAPDRAETKLLNITVQVGRTGVLTPVAELDPVVLAGTTVAR
ATLHNRDEIARKDIRVGDFVFVEKAGEVIPAVIGVNPARRTPACVPYVFPERCPVCGTAV
VQIEGEVALRCPNLECPVQVRRRVQHFASKACLDIEGLGEAMVDVLVEKGWVRTLSDIYR
LRRDELLTLGKSVEKSTDNLLAAIEASKRAELWRFINGLGIPHVGAAAAKDLARKFRGLE
ALATAQRDDFIQNKESVIGGIGETMADAILTFFAESRNRNVIDELVRAGVDPIVPAAGSA
LAGKTFVLTGTLPTLTRDDATARIEAAGGKVSGSVSKKTSYVVAGEEAGSKLEKAQTLGV
PVINEAELLTMLG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggccgaggcccagcaacgacttgatgaactgcgcgcggagatcgcgcgtcac
gatgaactttaccatcggcaggcgaagccggagatcagcgattttgactatgacaggttg
aagcgggagctggcggacctggaggcagcgtggccggcattgggaggggacaactcgcca
tcgcgcgcagtcggggatgatcgcacggcaggattcaagacgtatcgccatcgcgagcga
atgatgagtctcgacaacacttactccgctgaggagctgcgagagtttcacgaccggttg
acgcgcgatttggaacgcgacggactggaattcgtcgtggagccgaagatcgacggactc
gcggtgagccttacgttcgcaaaagggaaactcgtgcgtgcggtgacgcgcggaaacggc
gtggaaggcgatgacattaccgccaacgccctgacgatccgctcgctgccgcgagaattg
aagcgcggcccggatgcgccggtgccggacgtgatcgagattcgcggagagatttatctg
acgacggcggaatttcagcggatcaaccgccagcgggaggaagaaggggaacccgtttac
gcgaatccgcgcaatctcgccgccggcacgataaagcaactggacgcccgcgaggtggga
cagcgaaaactggagatcgtcctctacggtcgcgggtatttggagccggtcgcggccttg
ccggaaacgcagacgcagtttcatggctgggtgaaggcctggggcctgccgacggtggag
aagttctggacggtgcaaggggccgacgccgtcctcggcgcggtgcaagaactcgggaaa
ctgcgcgagagcttcgcgtatgcgacggatggcgccgtcgtgaaactcgatgccgtggca
ctccagcgccgcgcggggtcgacgagcaaatcgccgcgctgggccatggcttacaagttt
gcgcctgaccgggccgaaaccaagttgctcaacatcacggtgcaggtcggccgcaccggg
gtgctcacgcccgtggccgaactggatcctgtggtgctcgccggcacgacggtcgcacgc
gccacgctgcacaaccgcgacgagatcgcgcgcaaagatattcgcgtgggcgatttcgtt
ttcgtggagaaagcgggggaagtcatcccagcagtgatcggcgtcaatcccgcgcggcgg
acgcctgcctgcgtgccgtatgtgttcccggaaaggtgtcccgtctgcggcacggcggtc
gtgcagatcgaaggcgaggtggcgctccgttgtcccaatctcgaatgccctgtgcaagtg
cggcggcgcgtgcagcactttgcgtcgaaggcttgtctcgacatcgagggcttgggtgaa
gcgatggtcgatgtgctggtggaaaaaggctgggtgcgaacgctgtcggacatttaccgc
ctgcgacgcgacgagctgctcacactcgggaaaagtgtcgagaaatccacggacaacctg
ctcgcggcgatcgaggccagcaagcgcgcggagctgtggcgtttcatcaatgggctggga
attccgcatgtcggcgcggcggcggcgaaagatctggcgcggaaattccgtggattggaa
gcgctcgcgacggcgcaacgagacgattttattcagaataaagagtcggtgattggcggg
atcggcgaaacgatggcggatgcgattctgacgttcttcgctgagtcgcgcaatcggaac
gtcatcgacgagctcgtgcgggcgggcgtcgacccaatcgtgccggcggcgggcagtgcg
ctggcgggaaaaacgttcgtgctcaccggcacgctgccgacgctcacgcgcgacgacgcc
accgccagaatcgaagccgcgggtgggaaagtgagcggcagcgtgagcaagaaaacgagt
tacgtggtggcgggtgaagaagctggttccaaattggaaaaggcgcagacactcggcgtg
ccggtcatcaacgaggcggagttgctcacgatgctcggttaa
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