Oenanthe melanoleuca (Eastern black-eared wheatear): 130253813
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Entry
130253813 CDS
T09236
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma04115
p53 signaling pathway
oma04145
Phagosome
oma04148
Efferocytosis
oma04350
TGF-beta signaling pathway
oma04510
Focal adhesion
oma04512
ECM-receptor interaction
oma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130253813 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130253813 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
130253813 (THBS1)
04148 Efferocytosis
130253813 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
130253813 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
130253813 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130253813 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oma04131
]
130253813 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oma00536
]
130253813 (THBS1)
Membrane trafficking [BR:
oma04131
]
Endocytosis
Phagocytosis
Opsonins
130253813 (THBS1)
Glycosaminoglycan binding proteins [BR:
oma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130253813 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
130253813
NCBI-ProteinID:
XP_056348707
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All DBs
Position
5:complement(30092107..30107982)
Genome browser
AA seq
1177 aa
AA seq
DB search
MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMRKGAGRRAPGVYLVKGPE
SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSVVSNGKAGSLDLSLSVDGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSATITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL
QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKPCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMTNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDNVPDIDDICPENVEIS
ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgctctctgcctcctgctcctcgtgctcggcggctcagagaccaag
cgcactgcagagtcgaggaatgatgataacagtgtcttcgatctctttgaactcattggc
ttcatgcggaagggagccgggcgccgggcccccggggtgtacctggtgaagggaccggaa
tcctccagccctgcttaccgcattgaggatgccagtcgcatccctgctgtccctgactcg
aagttccaagacttattagatgccatccatgctgagaagggcttcattctcctggctact
ctccggcaagccaagaagagcagaggcaccctgctctccgtggaacagaaagatggctct
ggtcatgtcttcagtgtagtgtcaaatggcaaggcaggctccctggacctgagcctttct
gttgatggcaagcagcagttagtgtcagtagaggatgtcttactagctacaggacattgg
aagaatatcaccctgtttgtgcaggaagaccgagctcagctctatgtggggtgtgagaaa
atggagaatgctgaactggacatccccatccagaacatcttcactagggacctggccagc
agtgccaggctccgtattgccaaagggggagtcaatgacaacttccagggtctgctgcag
aatgtgcggtttgtgtttggaactactctggaaactatcctgcggaacaaaggctgctcc
agctccactagtgcaaccattactttggacaaccccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt
gatgaactgactaatatgtttgtggaactgcaagggctacggtccatggttacaacactt
caagacagagttcgcaaagtgactgaagaaaatgaaatcattgccaaagtagtccaaatc
actcctggagcatgcattcataatggagtcctccacaaaaataaagaggagtggaccatt
gacagctgcactgaatgtacttgccagaactccgccactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccaccgtgcccgatggggagtgctgccctcggtgctgg
cctagcgactatgcagatgatggatggtctccttggtctgaatggacctcgtgttctgtg
acctgtggtaatgggattcagcagagaggccgttcctgtgacagcctcaataaccgctgt
gaaggctcctctgtgcagactcggacttgccaccttcaggagtgtgataagagatttaaa
caggatggtggctggagtcactggtcaccatggtcatcatgttctgtcacttgtggcacg
ggcatcatcaccagaattcgtctttgcaactctccagtaccacagctgaatggcaaacct
tgtgagggtgaagcaagagaaaacaagccctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggccttcag
aaacggagccgtctctgcaataatcccgagcctcagtacggtgggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct
aatccctgctttgcgggggctacgtgcaccagtgcccctgatggttcctggaagtgtggt
gcctgtcctgctggctaccatggtgatggtattcactgccaagatattgatgagtgcaaa
gaggttcctgatgcctgctttgtcttcaatggagtgcacaggtgtgagaatactgaacct
ggctacaactgtctgccttgtccaccacgtttcactggaacacagccatttggccgcagt
gttgaggatgccatgactaacaaacaggtctgcaagccacgtaatccatgcacagatgga
acacatgactgcaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg
tatcgctgtgaatgtaaaccaggctatgctggcaatggcatcatctgtggagaagatact
gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt
aaaaaagataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg
attggtgatgcctgtgacgatgatgatgatgatgatggcattcctgatgatcgggacaac
tgtccattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgc
tgtgacaactgtccctacaatcacaaccctgatcaaactgacactgacaacaatggggaa
ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcaatgt
gataactgtccactggaacacaaccctgatcaggaagacaccgattctgacctcatcggt
gatcagtgtgacaacaaccaggacatagatgaagatggccatcaaaataaccttgataac
tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc
tgtgaccacgatgatgacaatgatggtatccccgatgacaaagataactgcagactggtt
gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagacaacgtgccagacattgatgatatctgccctgaaaatgtggaaattagt
gagactgatttccgaaaattccagatgattcccctggatcccaaaggaacatcccaaaat
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac
cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggtaccttcttt
atcaatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt
cgtttttatgtggtcatgtggaagcagatcacccagtcttactgggactccacaccaacc
aaagctcaaggctattcaggtctctccatcaaagttgtgaattccaccactggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcatgaccctcgtcacataggctggaaagacttcactgcatacagatggcgacttagc
catagaccaaagaccggctacatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctacgacaaaacctatgctggtggtcggctaggattatttgtcttc
tctcaagaaatggtgttcttctcagatcttaaatatgaatgcagagattcataa
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