Oenanthe melanoleuca (Eastern black-eared wheatear): 130259853
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Entry
130259853 CDS
T09236
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130259853 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oma03000
]
130259853 (KDM2B)
04121 Ubiquitin system [BR:
oma04121
]
130259853 (KDM2B)
03036 Chromosome and associated proteins [BR:
oma03036
]
130259853 (KDM2B)
Enzymes [BR:
oma01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
130259853 (KDM2B)
Transcription factors [BR:
oma03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130259853 (KDM2B)
Ubiquitin system [BR:
oma04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130259853 (KDM2B)
Chromosome and associated proteins [BR:
oma03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130259853 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
130259853 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
130259853
NCBI-ProteinID:
XP_056360584
LinkDB
All DBs
Position
15:complement(2708582..2814656)
Genome browser
AA seq
1287 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQE
PTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRALNNSERLHRFSKGLNGTPRELRHHQLMPSLRSAPRGIARPPPSLSPPKCIQMERHVI
RPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWT
KIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIA
VSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGCTLESMETLSSSSGKE
QFCGSCHIRPDFSSGQIDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCN
HVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKE
GCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaagacggtacgatgagaacgaggacctctcagacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacact
cagagaggagttgagatgagcatgtctcagtttgtgaggtactacgagaccccagaggcc
cagcgggagaagctctacaacgtcatcagcctggagttcagtcacaccaaactggagaac
attgtcaagcgccccaacgtggtggacttagtcgactgggtggataatatgtggccacag
cacttgaaggagagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcaaagtgat
atttttctgggagacagggtggaacggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggattcacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccgctatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactctaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggaggctgcagggaggaaacaaaaagccacagtgatgaggtacctaaaa
agaactttgtctaatgaatcagatgacagtgtaaaatcaacgacccccacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccgcaggctctcctggaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcggtggggcggcccaaggggaagctgggcgct
gcctcggcggtgaagctcgcggccaaccggagcacggcgggggcgcggcggcgccggacg
cgatgccgcaagtgcgaggcgtgtctgcggaccgagtgcggagagtgccacttctgcaag
gacatgaagaagttcggggggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atcgctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgcccaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaacaa
aagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgctgctgaaggagcag
aaaatcaacagagacaacaaggaggtgccagatgctgccaaaaggaaaggggactgcgag
gagactccacggcggaaatcggaggaacattccaaaaaggctccagttgactcaatcctg
aggagaaagtctgacgaggtgcatctgtggaggaagcggaaattcgagaagtcccaggag
cccacaatgagaaaacggcggcgctcatggaaggcccccgatgaccgaactgccatgatc
aaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaagccccccccagg
tccaaggatagcgaccagtctcggtccagctcgcccacagcagggcccagcacggagggc
gccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataag
gaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaacagc
cttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaacgaggaaccc
aagcgcgcgttgaacaacagcgagagactccacaggttcagcaaagggttgaacgggact
ccccgggagctgaggcaccaccagctgatgcccagcctgcgcagcgccccccgcggcatc
gcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcggcacgtcatc
cggcctcctcccatcagcccccctccggactcgctgcccctggatgacggggcagcccac
gtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagggacttgtgc
atctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggacc
aaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcattattagg
agacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagttgg
cttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggatagca
gtgtcggcactttgtagctccagttgtcccttgctgcgaactctggacgtgcagtgggca
gaaggactgaaagacgcacaaatgagagacctcctgtccccgcccacggacaaccggcca
ggctgcaacgggtgtactttagagagtatggaaacactttcttccagttcagggaaggag
cagttctgtgggtcatgccacattcgcccggatttcagctcaggtcagatcgacaaccgc
agcaagctgcggaacatcgtggagctgcgcctggccgggctggacatcacggacgcgtcg
ctgcgcctcatcatccgccacatgcccctgctctccaaactcaacctcagttactgtaac
cacgtgacagatcagtctatcaacctgctgaccgccgtgggcactaccacgcgcgactcg
ctcacggagattaatttatcagactgcaataaggtcactgaccagtgcctgtcttacttc
aaacgttgtgggaatatctgccagattgacctgaggtactgcaagcaagtgacgaaggag
ggctgtgagcagttcatagcagagatgtccgtaagtgtccagttcgggcaggtggaagaa
aaacttctgcaaaaactgagttag
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integrated database retrieval system
