Onychostoma macrolepis: 131532555
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Entry
131532555 CDS
T09350
Symbol
rigi
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
omc
Onychostoma macrolepis
Pathway
omc04622
RIG-I-like receptor signaling pathway
omc04623
Cytosolic DNA-sensing pathway
omc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
omc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
131532555 (rigi)
04623 Cytosolic DNA-sensing pathway
131532555 (rigi)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
131532555 (rigi)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
omc04054
]
131532555 (rigi)
Enzymes [BR:
omc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131532555 (rigi)
Pattern recognition receptors [BR:
omc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
131532555 (rigi)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
SWI2_SNF2
ERCC3_RAD25_C
Chromosome_seg
PhoH
AAA_22
Motif
Other DBs
NCBI-GeneID:
131532555
NCBI-ProteinID:
XP_058620305
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All DBs
Position
23:complement(1818792..1839870)
Genome browser
AA seq
936 aa
AA seq
DB search
MYEKEKENLRRFSDYITKFLRPSLIKNFMTTYLDKEVVESILSAEVMSVTTAAQMLLDRM
YYLEEVGWFQAFLDILLASEYTGLHHAIKEWSFRELEELSEHRRYLEKIEPSITKHMKPS
ELLAHMSGCLKPRECEEIQAEESQRGRIAASEKLVMSLLRSDRPNWFKLLKMALENCDLD
EALQLLETNGGGQAVKASEWDAEPEAMMTTVCFEFREETEDMLMSSNNTSASEKPAGFKG
EAERSGERKLREYQKELTATADQGQNTIICAPTGCGKTIVALAISEYHLKQFPERAKIVF
LATKVDVYEQQYKLFKEHFSSKDPNIRVAGMCGDMAMPVFLLIENHDIVVMTAQILVNAL
QSGEVPSLEMLSLILFDECHNTTGKHPYNNIMTRYLDTKLTSSTHSLPQIVGLTASVGIG
SFKSSLEAENNILQLCANLDSRVITTVSEHKDELKSYVHTPQKAFFEVQQCTSHPFIRII
KNIMSNIEQLALKTYNIESLSNIQNREYGSQKYEQWIVSVQKSCRLLQMKNADEERRICR
ELYNYTEHLRKYNDALIINEDARTKDALDYLDAFFDQVRNAGYGETERKLTALYDCQRPQ
LLRLATEGEQNPKLDELRFILEEEYHSNDQTRTIMFVKTRALADAMKKWIDETDSLKFLN
PGVLIGKGRKSNFIGSGMTLNNKKGILESFKSSDQSKMLIATSVADEGIDIPQCNLVLMY
EYVGNVVKMVQVRGRGRAEGSRCFLISSSKECIEKEKINMYKEKMVEEAIIQLQSDPTNL
SNKVDTLQKKDKALRDHISASPEKPKTQGSYELLCYKCKRFACMSDDIRVVLGAHHIVLD
RSMFKRCTTVPHKNPKAFCGFSKKEKMLCAECKHDWGLVASYTTIQDLPLLKIESFVVQN
CVTRRQDYFRKWRDVTFAIRKFDMTEITAEMCRPRD
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagaaggaaaaggagaatttgcgccgctttagcgattatatcacgaagttttta
cgaccgtcactcatcaagaacttcatgacgacatacctcgataaagaggtggtggagagt
attctctctgcagaggtgatgtctgtgaccacagctgcccagatgctgctggaccggatg
tattatctagaggaagtgggctggtttcaggcctttctggacatcctgctcgcctcagag
tacaccggactgcaccacgccattaaagagtggagcttccgggagttagaggagctgagc
gaacacaggagatatctcgagaagatcgaaccctcaatcaccaaacacatgaagcccagc
gagctgctcgcgcacatgtccggctgtctgaagcccagagagtgtgaggagatccaggcg
gaggagagtcagcgcggtcgtatagctgccagtgagaagcttgtgatgagtctcctgcgc
tcagacagacccaactggtttaaactgctgaagatggcgctggaaaactgtgacttagac
gaggctctacaactgctggagacaaatggaggaggacaggctgtgaaggccagcgaatgg
gacgccgagccagaggccatgatgacgaccgtgtgttttgagttcagagaggagactgaa
gacatgctgatgagcagcaacaacacgagtgcctcagagaaacccgccgggttcaaaggg
gaagctgagcgatcaggtgagcggaagctgagagaatatcagaaggagctgaccgccact
gccgaccagggccagaacaccatcatctgcgctcccacaggatgtggaaaaactattgtg
gccttggccatcagtgaatatcacctgaagcagtttcccgaaagagcaaagatcgtgttt
ttggcaaccaaggtcgacgtttacgaacagcagtacaagcttttcaaggagcacttttcc
agcaaggatcccaacatcagggtggcggggatgtgcggcgatatggctatgcctgtgttc
ttgctcatagagaatcatgatatcgtggtgatgacggctcagatcctggtgaacgcactg
cagagcggcgaggtgccgtctctggagatgctgtcgctcatcttattcgacgagtgtcac
aacacgaccggaaaacacccctacaacaacatcatgacccgctacctggacaccaaactc
accagcagcacacactcactgccacagattgtgggcctgacggcgtcggtcggcatcggt
tcattcaagagcagcctggaggcagagaacaacatcttacagctctgtgccaacctggac
agcagggtcatcaccacggtcagcgaacacaaggatgagctcaagtcatacgtgcacaca
cctcagaaagctttttttgaggttcaacagtgcacgagtcaccccttcatcagaataatc
aaaaacatcatgagtaacatcgagcagctggcgctgaagacctacaacatcgagagcctg
tcaaacatccagaaccgagagtacggctcgcagaaatatgagcagtggatcgtctccgtt
cagaagagctgcagactcttacagatgaagaacgcagatgaggagagacgcatctgcaga
gaactctacaactacactgaacacctgcggaaatataacgacgctctgataattaatgaa
gacgcgcggactaaagatgcgctggattatctggacgcgttctttgatcaggtccggaac
gccggctacggcgagactgagaggaaactcaccgcgctctatgactgtcagcggccgcag
ttactgcgtctggccaccgagggggagcagaaccctaaactagatgagctgaggttcatc
ctggaggaggaataccacagcaacgatcagacacgcaccatcatgttcgttaagacacgc
gccctcgcagacgcaatgaagaaatggattgatgagaccgattccctcaagttcctgaac
cctggagttctgataggaaaaggacgaaaatccaactttattggctcaggaatgactctg
aacaataagaaaggtattctggaatcgtttaagagctccgatcagagtaagatgctcatc
gccacatcggtcgctgatgaaggcatcgatatcccacagtgtaacttggttctgatgtat
gagtatgtgggaaacgtggtgaagatggtgcaagttcgcggtcgtggtcgggcggagggc
agccggtgtttcctgatctctagtagtaaggagtgcattgagaaggagaaaataaacatg
tataaggagaagatggtggaggaggccatcatccagctgcagagcgaccccaccaacctc
agcaacaaggtggacacgctgcagaagaaagataaagccctgagagatcacatcagcgcc
agtcctgagaaacccaaaacccagggaagctacgagctcctctgctacaagtgcaagagg
tttgcatgcatgagcgacgacatcagagtcgtgctgggtgctcatcacattgttctggat
cgctccatgttcaagcgctgtacaactgttccccataagaacccaaaagccttctgtggc
ttcagtaagaaagagaagatgctctgtgccgagtgcaaacacgactggggcctcgtcgcc
tcttacaccaccatccaggatctgccgctgctgaagatcgagagtttcgtggtgcagaat
tgcgtcactcgcaggcaggattacttcagaaagtggcgtgacgtgacgtttgccatccgc
aagtttgacatgacggagatcacggctgaaatgtgccggccgagagactga
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