KEGG   Oryzias melastigma (Indian medaka): 112137200
Entry
112137200         CDS       T07439                                 
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b
  KO
K23611  guanine nucleotide exchange protein SMCR8
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:oml00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    112137200 (smcr8b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oml04131]
    112137200 (smcr8b)
Membrane trafficking [BR:oml04131]
 Autophagy
  Other autophagy associated proteins
   Rab associated proteins
    112137200 (smcr8b)
SSDB
Motif
Pfam: Folliculin
Other DBs
NCBI-GeneID: 112137200
NCBI-ProteinID: XP_024115143
LinkDB
Position
LG1:11779005..11787464
AA seq 892 aa
MIGSPDLLAFTSADEFEEGGREQGLPEELSVPLSPPRDPWSTKAQFHRDFILVAEFSEQV
GPKPVLTIPDDQRVIGSFDLNHFSVRIMSVDYQASGPGLTPPTSPGPRLNFSEDSKVILG
DSAEDAFVYVHHVTLYDLETRGMVRPFCMAYICSDQMKLMENFCELSAGFSQASESLKTG
NRQAFSSELQRKLQELEYRRRTLLQDGNGSTEGGRKSDDLEGVERSILNNRELLRQVMSY
PNRKLGEPDFLPYDPADSLTDPTALLPVEPCPSSLLTSITSERSLKPLQELCNDYFLSLM
KEQLVDTERRLRRDRSVLRTTSITQSLSRKLRLTNFLFEAWSPEDADEDEGKGADAATHR
AAGGKSSPEDIYSEPNRKEVFFSCVEELPIKLEAGEAGRVTPDPSATEMTGSVSSGDSIE
VLGTEKSYRTQPGVVGSVRREVQLGRVDVCLRHAAVDTGVRRVQASAKRANSEDSIEVLS
TTESIIPEDLTAITEEEAEALSLTNGFGNEDCSLMGFLKEQRENAASASEPDEPSSDAEE
SLGDGMCCDGKREDTNAARSDESHEDPLPEPTSKLLQAEAAVESAPQWPEVRQRKRLVPD
LHVIFAPPVAPVDLDRRCLPSPPLRLLSVDEASDCTSFTSSSDPPTPTQSHPGNLQTSKR
RRRKAGLRALRFIKQHSFSQHAVFCLLSGRPLVVMGGDEGLVRKLVDALSLFVPSPGHDG
GAVMPCLTTPLQLTDLLTWRLIGIHRSSSSSSSAVLQSLNQYRRYLALLDLDKRTLQCPS
YAGSLLATLADPHTGISRGITYLQHLESCLSALANRALLHTFGMAPSHLNTAAGLGGTEE
DGLQTGLRRSDGDLRVMNFLSELIKQQHVGRGPPVLMFTYSSVQLHRNTTNE
NT seq 2679 nt   +upstreamnt  +downstreamnt
atgatcggctcgccggacctgctggccttcaccagcgcggatgagttcgaggagggcgga
cgtgagcagggtctccccgaggagctgtcggtgcccctctcacccccgcgtgacccctgg
agcaccaaggcgcagtttcaccgagacttcatcctggtggcggaattctccgaacaggtg
ggtccaaagcctgttctcaccataccagacgatcagcgcgtcatcggttcattcgacctc
aatcacttctccgttcgcatcatgtcggtggactaccaggcgtcgggccccggcctcacc
cctcctacctcacctggtccccgcctgaacttcagcgaggactccaaggtgatcctggga
gactcggcggaggacgcgtttgtgtatgtacaccatgtgaccctgtatgacctggagact
cggggcatggtgcgacctttctgcatggcctacatttgctcggaccagatgaagctgatg
gagaacttctgcgagctgtcggcgggcttctctcaggcgtccgagagcctcaagacggga
aacagacaagcgttttcatcagagctgcagaggaagctgcaggagctcgagtacagacgg
aggactctgctccaggatggaaacggctccacagaaggtggaaggaaaagcgatgatctt
gaaggtgtagaaaggtccatcctgaataacagagagctccttcgtcaggttatgtcttac
ccaaacaggaagctcggggagccggacttcctgccttacgatcctgctgactccctcaca
gatcccaccgcccttcttccagttgagccctgcccctcctccctgctcacctccataacg
tcagagcgctctctgaagccgttacaggaactctgcaacgactacttcctgtccctgatg
aaggagcagttagtggataccgaacgccgtctgcgccgtgacaggagcgtcctgagaacc
accagcatcacccagtcactgtccaggaagctgaggctcacaaacttcctgtttgaggcg
tggagtccagaagatgcagacgaggatgaaggaaaaggtgcggatgcggcgactcacaga
gccgcggggggcaagagcagccctgaagacatttactctgaacccaaccgcaaggaggtg
ttcttctcctgcgtggaggagctgccaatcaaactggaggctggagaagcaggaagggtg
acccctgacccctccgccactgaaatgacagggagcgtgagcagcggcgacagcatcgaa
gtgctggggacggaaaagtcttatcggactcagccgggcgtggtcggctcggtcaggaga
gaagtgcagctgggcagggtggatgtctgcctccggcatgcagcagtggacacaggtgtc
aggcgtgtgcaggccagtgccaaacgtgccaacagcgaggacagcatcgaagtgctgagc
accaccgagtccataatccctgaagacctcaccgccatcacagaggaggaagcagaggct
ctttctctcaccaacggcttcggaaacgaggactgctcactgatggggttcctcaaggag
cagagggagaacgctgcttctgcttcagagcctgatgaaccgtccagtgacgcagaggag
tctttgggagatgggatgtgctgtgacggcaagagggaggatacgaatgcagcgaggagc
gacgaaagccatgaagatccccttccagagccgacgtccaaactgctgcaagctgaagca
gcggtggagtctgcgccgcagtggccggaggtccgccaaaggaagaggctggtgcctgac
ctccatgtgatctttgccccgcctgttgcccctgtagacctcgaccgtagatgcctgccg
tccccccctctgaggctgctgagcgtggacgaggcatcggactgcaccagctttaccagc
tcctccgacccgcccacccccacccaaagccaccccgggaaccttcagaccagcaagagg
aggagaaggaaagccggcctgagagccctcaggttcatcaagcagcactcgttttcccag
catgccgtgttttgtctgctgagcggccggccgctggttgtaatgggaggagacgagggt
ttggtgaggaagctcgtggacgctctgagcctcttcgtgccgtccccgggccacgacggg
ggcgcagtgatgccgtgtttgaccacgccccttcagctgacagacctgctcacctggaga
ctcataggaattcacagatcttcttccagctcctcatctgccgttcttcagtctctgaat
cagtacaggcgttatctggctctgctggacctggacaagagaacgctgcagtgtccgtcc
tacgccggctcgctcctcgccactttagccgaccctcacacgggcatcagcagaggcatc
acctacctgcagcatttggagagctgcctgtctgcactggccaacagagccctgctgcac
acttttggaatggcgccgtctcatctgaacacggcagcaggactcggagggaccgaggag
gacgggctgcagacagggctacgcagaagtgacggcgacctgagagtgatgaacttcctg
tccgagctcatcaagcagcagcatgtgggccgaggacctccagtcctcatgtttacttac
agctcagtgcagctccacagaaacacaacgaatgaatga

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