Oryzias melastigma (Indian medaka): 112137200
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Entry
112137200 CDS
T07439
Symbol
smcr8b
Name
(RefSeq) guanine nucleotide exchange protein smcr8b
KO
K23611
guanine nucleotide exchange protein SMCR8
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112137200 (smcr8b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112137200 (smcr8b)
Membrane trafficking [BR:
oml04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
112137200 (smcr8b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Folliculin
Motif
Other DBs
NCBI-GeneID:
112137200
NCBI-ProteinID:
XP_024115143
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Position
LG1:11779005..11787464
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AA seq
892 aa
AA seq
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MIGSPDLLAFTSADEFEEGGREQGLPEELSVPLSPPRDPWSTKAQFHRDFILVAEFSEQV
GPKPVLTIPDDQRVIGSFDLNHFSVRIMSVDYQASGPGLTPPTSPGPRLNFSEDSKVILG
DSAEDAFVYVHHVTLYDLETRGMVRPFCMAYICSDQMKLMENFCELSAGFSQASESLKTG
NRQAFSSELQRKLQELEYRRRTLLQDGNGSTEGGRKSDDLEGVERSILNNRELLRQVMSY
PNRKLGEPDFLPYDPADSLTDPTALLPVEPCPSSLLTSITSERSLKPLQELCNDYFLSLM
KEQLVDTERRLRRDRSVLRTTSITQSLSRKLRLTNFLFEAWSPEDADEDEGKGADAATHR
AAGGKSSPEDIYSEPNRKEVFFSCVEELPIKLEAGEAGRVTPDPSATEMTGSVSSGDSIE
VLGTEKSYRTQPGVVGSVRREVQLGRVDVCLRHAAVDTGVRRVQASAKRANSEDSIEVLS
TTESIIPEDLTAITEEEAEALSLTNGFGNEDCSLMGFLKEQRENAASASEPDEPSSDAEE
SLGDGMCCDGKREDTNAARSDESHEDPLPEPTSKLLQAEAAVESAPQWPEVRQRKRLVPD
LHVIFAPPVAPVDLDRRCLPSPPLRLLSVDEASDCTSFTSSSDPPTPTQSHPGNLQTSKR
RRRKAGLRALRFIKQHSFSQHAVFCLLSGRPLVVMGGDEGLVRKLVDALSLFVPSPGHDG
GAVMPCLTTPLQLTDLLTWRLIGIHRSSSSSSSAVLQSLNQYRRYLALLDLDKRTLQCPS
YAGSLLATLADPHTGISRGITYLQHLESCLSALANRALLHTFGMAPSHLNTAAGLGGTEE
DGLQTGLRRSDGDLRVMNFLSELIKQQHVGRGPPVLMFTYSSVQLHRNTTNE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgatcggctcgccggacctgctggccttcaccagcgcggatgagttcgaggagggcgga
cgtgagcagggtctccccgaggagctgtcggtgcccctctcacccccgcgtgacccctgg
agcaccaaggcgcagtttcaccgagacttcatcctggtggcggaattctccgaacaggtg
ggtccaaagcctgttctcaccataccagacgatcagcgcgtcatcggttcattcgacctc
aatcacttctccgttcgcatcatgtcggtggactaccaggcgtcgggccccggcctcacc
cctcctacctcacctggtccccgcctgaacttcagcgaggactccaaggtgatcctggga
gactcggcggaggacgcgtttgtgtatgtacaccatgtgaccctgtatgacctggagact
cggggcatggtgcgacctttctgcatggcctacatttgctcggaccagatgaagctgatg
gagaacttctgcgagctgtcggcgggcttctctcaggcgtccgagagcctcaagacggga
aacagacaagcgttttcatcagagctgcagaggaagctgcaggagctcgagtacagacgg
aggactctgctccaggatggaaacggctccacagaaggtggaaggaaaagcgatgatctt
gaaggtgtagaaaggtccatcctgaataacagagagctccttcgtcaggttatgtcttac
ccaaacaggaagctcggggagccggacttcctgccttacgatcctgctgactccctcaca
gatcccaccgcccttcttccagttgagccctgcccctcctccctgctcacctccataacg
tcagagcgctctctgaagccgttacaggaactctgcaacgactacttcctgtccctgatg
aaggagcagttagtggataccgaacgccgtctgcgccgtgacaggagcgtcctgagaacc
accagcatcacccagtcactgtccaggaagctgaggctcacaaacttcctgtttgaggcg
tggagtccagaagatgcagacgaggatgaaggaaaaggtgcggatgcggcgactcacaga
gccgcggggggcaagagcagccctgaagacatttactctgaacccaaccgcaaggaggtg
ttcttctcctgcgtggaggagctgccaatcaaactggaggctggagaagcaggaagggtg
acccctgacccctccgccactgaaatgacagggagcgtgagcagcggcgacagcatcgaa
gtgctggggacggaaaagtcttatcggactcagccgggcgtggtcggctcggtcaggaga
gaagtgcagctgggcagggtggatgtctgcctccggcatgcagcagtggacacaggtgtc
aggcgtgtgcaggccagtgccaaacgtgccaacagcgaggacagcatcgaagtgctgagc
accaccgagtccataatccctgaagacctcaccgccatcacagaggaggaagcagaggct
ctttctctcaccaacggcttcggaaacgaggactgctcactgatggggttcctcaaggag
cagagggagaacgctgcttctgcttcagagcctgatgaaccgtccagtgacgcagaggag
tctttgggagatgggatgtgctgtgacggcaagagggaggatacgaatgcagcgaggagc
gacgaaagccatgaagatccccttccagagccgacgtccaaactgctgcaagctgaagca
gcggtggagtctgcgccgcagtggccggaggtccgccaaaggaagaggctggtgcctgac
ctccatgtgatctttgccccgcctgttgcccctgtagacctcgaccgtagatgcctgccg
tccccccctctgaggctgctgagcgtggacgaggcatcggactgcaccagctttaccagc
tcctccgacccgcccacccccacccaaagccaccccgggaaccttcagaccagcaagagg
aggagaaggaaagccggcctgagagccctcaggttcatcaagcagcactcgttttcccag
catgccgtgttttgtctgctgagcggccggccgctggttgtaatgggaggagacgagggt
ttggtgaggaagctcgtggacgctctgagcctcttcgtgccgtccccgggccacgacggg
ggcgcagtgatgccgtgtttgaccacgccccttcagctgacagacctgctcacctggaga
ctcataggaattcacagatcttcttccagctcctcatctgccgttcttcagtctctgaat
cagtacaggcgttatctggctctgctggacctggacaagagaacgctgcagtgtccgtcc
tacgccggctcgctcctcgccactttagccgaccctcacacgggcatcagcagaggcatc
acctacctgcagcatttggagagctgcctgtctgcactggccaacagagccctgctgcac
acttttggaatggcgccgtctcatctgaacacggcagcaggactcggagggaccgaggag
gacgggctgcagacagggctacgcagaagtgacggcgacctgagagtgatgaacttcctg
tccgagctcatcaagcagcagcatgtgggccgaggacctccagtcctcatgtttacttac
agctcagtgcagctccacagaaacacaacgaatgaatga
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