Oryzias melastigma (Indian medaka): 112139583
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Entry
112139583 CDS
T07439
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112139583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112139583
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112139583
Complex C
U5 SnRNP specific factors
112139583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D2
EFG_III
EF-G_D2
Roc
Ras
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
112139583
NCBI-ProteinID:
XP_024118172
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
PIIKPVKHRRFALMEQELPATVYDMEFLADLMDGPELIRNVTLCGHLHHGKTCFVDCLIE
QTHPEIRKRDDVDLRYTDILFTEQERGVGIKSTPVTMVLPDSRGKSYLFNIMDTPGHVNF
SDEVTSSMRISDGVVLFIDAAEGVMLNTERLIKHAVQERMAITICINKVDRLIVELKLPP
TDAYYKLRHIVDEVNGLLSTYSTDENLVVSPLLGNVCFASSQYSICFTLGSFAKIYSDTY
GDINYNEFAKRLWGDIYFNPKTRKFTKKAPSSNSQQSFPKSSLLQVVGDVDTSLPRVLDE
LGIHLSKEELKLNIRPLLRLVCNRFFGEFTGFVDMCVQHVPSPQEGARTKIEHTYTGGLD
SDLGEAMAECDPEGPLMCHTTKMYSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYSLED
EEDSSVCTVGRLWISVARYQIEVNRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFR
PLKFNTASVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLD
CVMHDLRKMYSEIDIKVRTFTPAIKHINP
NT seq
1712 nt
NT seq
+upstream
nt +downstream
nt
agccgatcatcaagcctgtaaaacacaggcgttttgctttgatggagcaggagctgccag
caacagtttatgacatggaatttcttgcagatctgatggacggtcccgaactgatccgaa
acgtcactctctgtggtcaccttcatcacggcaagacgtgttttgtagattgtctgattg
agcagacacacccagaaatcaggaagagagatgatgtggatctccggtacacagacatcc
tctttacagagcaggagagaggagtcggcatcaaaagcactcctgtcacgatggtcctgc
ccgactccagaggaaaatcctatttgttcaacatcatggatactccaggtcacgtgaact
tctctgacgaggtcacgtcaagcatgaggatctcagacggcgtcgtcctcttcatcgatg
cagcagagggagtgatgctgaacacggagcgcctgatcaaacacgccgttcaggagcgca
tggccatcaccatctgcatcaacaaggtggaccgactcatcgtggagctcaagctgcccc
ccaccgatgcgtattataaactccgtcacattgtggacgaggtcaacggtttgctcagca
cgtactccacagacgagaacctggtggtgtcccccctcctcgggaacgtctgctttgcca
gctctcagtacagcatctgcttcactctgggatcctttgcgaagatctactccgacacct
acggagacatcaactataatgaatttgccaagagactctggggagacatttacttcaatc
ccaaaactcgtaagttcactaagaaagctcccagcagtaactctcagcaatccttcccca
aatcctctttgctgcaggttgtcggggatgtggacacatctctgccccgagttctggatg
agctggggatccacctgtcgaaggaggaactgaagctgaacatccgacctctgctgaggc
tggtctgcaaccgcttctttggagaattcaccggttttgtggacatgtgtgtgcaacacg
tcccatcgccacaagagggcgccaggacgaagatagagcacacctatactggcggtctgg
actcagacctgggggaggccatggcagaatgtgaccctgaaggtcctctgatgtgccaca
ccactaaaatgtacagcaccgaggacggagtgcagttccacgcgttcggacgggttctga
gtggtaccattcaggcgggtcagcccgttaaagttctgggggagaactactcactggagg
atgaggaggactcttcggtctgcaccgtcggccgcctctggatctccgttgccaggtacc
aaatcgaggtgaatcgggtcccagcaggaaactgggttctcatcgaaggctgtgaccagc
cgatcgtgaagacggccacgatcacggaacccagagggaacgaagaggctcaaatcttca
ggccgttaaagttcaacacagcctcggttatcaagatcgcagtggagccggtgaacccct
cagagctgccgaaaatgctggacggcctgaggaaggtcaacaagagctacccgtcgctga
ccacaaaggtggaagagtctggagagcacgtcatcctgggaactggagaactgtacctgg
actgtgtgatgcacgacctgaggaagatgtactctgagatcgacattaaagtacggacat
ttacacctgctataaagcacattaacccttaa
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