Oryzias melastigma (Indian medaka): 112141746
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Entry
112141746 CDS
T07439
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04620
Toll-like receptor signaling pathway
oml04621
NOD-like receptor signaling pathway
oml04622
RIG-I-like receptor signaling pathway
oml05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112141746 (traf3)
04621 NOD-like receptor signaling pathway
112141746 (traf3)
04622 RIG-I-like receptor signaling pathway
112141746 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112141746 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
TRAF3_RING
zf-C3HC4
Sina_ZnF
GAS
ATG17_like
ATG16
zf-C3HC4_2
Fzo_mitofusin
DUF4201
EzrA
Crescentin
FapA
CHASE3
DUF1664
Synaptobrevin
KxDL
DASH_Dad2
TolA_bind_tri
MctB
Snapin_Pallidin
Rx_N
Motif
Other DBs
NCBI-GeneID:
112141746
NCBI-ProteinID:
XP_024120709
Ensembl:
ENSOMEG00000021259
LinkDB
All DBs
Position
LG22:2126940..2136246
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AA seq
594 aa
AA seq
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MSAGRSADGREVQIPLQQAAPSLALPLSAAAVVSAPSPRSSNPRPPGEPPTQQGAPAGFL
PLRGGFRDHFVEAPEAKYCCEACRLVLCQPRQTECGHRFCYSCINDILSCPNPVCPADME
PLFKDKIFRDVCCHREIMALKVYCRSEANGCQEQMSLQQIPDHLNVCPFFEVPCPLGKCK
ERMMRKEIPEHLAWKCKYRESTCEFCKNKMPLTELQKHKETVCPAFPVSCPNHCTSSSLP
RSELSSHQHDCPKAQVSCQFHRYGCSFKGLNLDMRQHESSFAAEHLKMMATRTGLLETKV
EEVKGELMERYKVLPALSTRLSDLESQTDELRERNRQMEQKLAAMQKLMSSHTEKLLEVE
LELRSLRQLRDEMENLRGTLDTVRTRLSALEQGGRSGSGSAHTLASLETQLNRHDDMLSV
HEIRLADMDLRFQVLETASYNGTLIWKIRDYKRRKQDAVAGKTLSLYSQPFYTGYFGYKM
CARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFKP
DPSSSSFRRPVAEMNIASGCPLFVSQSVLESGTYIKDDTIFIKVTVDTSDLPEP
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggggaggagtgctgatgggagggaggtccagattcccctccagcaggcggcg
ccgtctctcgccctgcccctctctgctgccgctgtcgtctccgccccctctccccgctcc
tccaatcctcggcctccgggcgagccccccactcagcaaggtgctccggcgggtttcctg
ccgctgcgcggaggattcagggatcacttcgtagaagctccggaagccaagtactgctgt
gaggcctgcaggctggtcctgtgtcagccccggcagactgaatgtggacatcgcttctgc
tacagctgcatcaatgacatcctcagctgtccaaacccggtgtgtccggcagacatggag
cctctgttcaaagacaagatctttcgagacgtttgctgccatcgggagatcatggctctg
aaggtttactgccgcagcgaggccaacggctgccaggagcagatgagtctgcagcagatc
ccagaccacctgaacgtgtgtccgttctttgaggttccctgtccgctgggtaaatgtaag
gagcgaatgatgaggaaggagatcccggagcacttagcctggaagtgtaaatacagagag
agcacctgcgagttctgcaagaacaagatgcctctgaccgagctgcagaaacacaaagag
acggtgtgtccagcgtttccggtgtcctgtccgaaccactgcacctcctcctcgctgccc
cggagtgagctctccagccaccagcacgactgtcccaaagcccaggtcagctgccagttc
caccgatacggctgctccttcaagggtctgaacctggacatgaggcagcacgagtcgagc
ttcgccgcagagcacctgaagatgatggccaccagaacggggctcctggagaccaaggtg
gaggaggtcaaaggcgagctgatggagaggtacaaggtcctgccggctctcagtacccgg
ctgtcggacctggagagccagacggacgagcttcgagagaggaaccggcagatggaacag
aagctggccgccatgcagaaactgatgagctctcacacggagaagctgctggaggtggag
ctggagctgcggtcgctgcgtcagctccgagacgagatggagaacctgcgaggaacgctg
gacaccgttcggacccggctgagcgctctggagcagggaggccgcagtggcagcgggtct
gctcacactctggcttccctggagacgcagctaaaccgccacgacgacatgctgagcgtc
cacgagatccggctggcggacatggacctgcggttccaggtgctggagacggcgagctac
aacggcactctgatctggaagatccgcgactacaagaggcggaaacaggacgcggtggcg
gggaagacgctgtcgctgtactcgcagccgttctacaccggctacttcggctacaaaatg
tgcgccagagtttacctgaacggggacggcatgggcaaggggactcacctgtcgctgttc
tttgtggtgatgcggggggagtacgacgccctgctgccctggcccttcaagcagaaggtg
actctgatgctcatggaccagggtccgtcccggaaacacctgggcgacgccttcaagccc
gaccccagcagcagcagcttccggcgtcccgtggcggagatgaacatcgcctccggctgc
ccgctcttcgtgtcccaaagcgtcctggagtccggcacctacatcaaagacgacaccatc
ttcataaaggtgaccgtggacacgtctgacctgcccgagccgtga
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