Oryzias melastigma (Indian medaka): 112142306
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Entry
112142306 CDS
T07439
Name
(RefSeq) otoferlin
KO
K19949
otoferlin
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112142306
Membrane trafficking [BR:
oml04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112142306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
FerB
Ferlin_C
dsrm_Ferlin
FerI
Motif
Other DBs
NCBI-GeneID:
112142306
NCBI-ProteinID:
XP_036066728
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
MEPSSGRPVDYQVSVTVIEARQLVGLNMDPMVCVEIGEEKKYTSMKESTNCPYYNEYFVF
DFHVPPYVMFDKILKVSVIHSKNLLRSGTLVGTFKLDVGTIYSQPEHQFYHKWALLSDPD
DITAGGKGYVKCDIAVVAKGDTIKTPHKANESDEDDIDGNLLLPEGVPAERQWARYYLKI
YRAEGLPRMNTSIMANVKKAFIGENKDLVDPYVQVQFAGQKGKTSVQKSCYEPIWNEQIV
FTEMFPPLCRRMKIQLRDSDKVNDVAIGTHFLDLRNISNDGDKGFLPTLGPAWVNMYGST
RTYTLLDEYQELNDGLGEGVSFRARLLISLGVEILDTSSPEISSSTEVQVEGVPNISESA
TGKVDEFFLFGSFLEATMIDRKIGDKPINFEVTIGYYGNEIDGALQPKTKGERGKDKGDE
EETELIHNSSEEEMDDDGDLTSVATTPPMKPVITDRNYFHLPYFERKPCIYIKSWWQDQK
RRLYNSNIIDNIADKLEDGLNDVHEIIKTEKAYPERRLRGVLEELSQGCSQFLTLANKDQ
NQSGRTKLDKERLKLCLSEVEAIGVQAKAMRSQVKKSTVRDKLKLSQNFLSKLRFLADEP
QHSVPDVFIWMISNGKRIAYARIPSKDILYSSIDEEKGKDCGKVKTIFLRIPGKKGFGPA
GWTVQSKIEIYLWLGLNRQRKDYLSGLPNGFEENKLSKGPGLPSTPPISLTYMMKQIFQL
RVHMYQARSLFAADSTGLSDPFARVFFSTQSQVTEVLAETLCPTWDQLLVFENVELFGEA
AELRDDPPIIVIEIYDQDTVGKADFMGRTFAKPVVKMADEHYGPPRFPPQLEYYQIYRGN
CAAGEMLAAFELLQIGPNGKADLPPIDGPTDMDRGPILPVPLGIRPVLSKYRIEVLFWGL
RDLKRVNLAQVDRPRVDIECAGKGVQSALIPNFKKNPNFSTLVKWFEVDLPENELLHPPL
NIRVVDCRAFGRYTLVGSNAVSSLRKFIYRGQDKQANSWSTTEEIIVVSMEQEPAFKKME
TVVKLDSCSEAVVKVEDDDKDEKGKKKKRKKLDEPEEEELDESMLDWWSKYFASIETLTE
ALKSQEAALSDSEDKEDMDLADGGDIKPDDGPVKSNRKGKTKKDKKKAGFDAFGRKKPKL
DELKVYPKELESEFDNFEDWLHTFYLFRGKAGDDDDQTVTDEDRIVGKFKGSLCMYKVSD
DTPRDMSFDSNMGMFQNIPNNDPVNVLVRIYVVRATDLHPADINGKADPYIAIRLGKTEI
KDKENYISKQLNPLFGKSFDVEATFPMDSTLTVSIYDWDLVGTDDLIGETKIDLENRFYS
KHRATCGVGNKYSIHGYNVWRDPMKPTQILAKLCKDGKLDGPHYGPGGRVKVENRVFMAP
TEIEDENGLKKKTDEHLALCVLTHWEEIPRVGCKLVPEHVETRPLLHPDKPGIEQGRIEL
WVDMFPKEMTAPGPALDISPRKPKKFELRVIIWNTDEVVLEDDDIFTGEKSSDIFVRGWL
KGQQEDKQDTDVHYHSITGEGNFNWRFVYPFDYLMAEEKIVISKKESMFAWDETEYKIPP
RLNLQVWDADHFSADDFLGAIELDLNRFPRGAKTPKQCSIEMVTNEAEMPMVSIFKQKRI
KGWWPFVARNEEDEFELTGKVEAELHLLTGEEAEKSPAGEGRNEPEPLEKPNRPDVALLW
FLIPLKAAKHLVCDQYRWLTIKIVTALLLLAILGLFLYNMPGYMVKKMLGA
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atggagcccagttctgggagaccagtggactaccaagtcagtgtgacagtgattgaagcc
agacagctggtgggactcaacatggatcccatggtctgtgtggagattggagaggagaag
aagtacacctccatgaaggaatcgaccaactgcccttactacaacgagtatttcgtgttc
gacttccacgttcctccttatgtcatgtttgataaaatcctgaaagtgtctgtaattcac
tccaaaaatcttcttcggagcggaactctggtgggaacgtttaaactggacgtaggaacc
atctactctcagccagaacatcagttttaccataagtgggcgctcctgtccgaccctgat
gacatcacagccgggggcaaaggctatgtaaagtgtgacattgcagttgtggctaaaggg
gacaccatcaaaactccacacaaggcgaatgaatcggatgaggatgacattgatggcaac
ctgttgctaccagaaggggtccctgccgagcgacagtgggctcggtattacctgaagatc
tacagagcagaaggacttcctcgaatgaacaccagcatcatggccaacgtcaaaaaagcc
tttattggagaaaacaaggacttggttgacccttatgtccaggtccagtttgctgggcag
aagggaaagacgtcggtccagaagagctgctacgagcccatctggaacgagcagatcgtc
ttcactgagatgttccccccactgtgcagacgcatgaagatccagctccgagactcagac
aaagtcaacgacgttgccataggaacacacttcttggacctgaggaacatttctaacgat
ggagataaaggttttctgcccacgctgggcccggcgtgggtgaacatgtacggctccact
cgcacctacacccttctggacgagtaccaggagctgaatgacgggctcggggagggcgtg
tccttccgggcgcgcctgcttatcagtctgggggtggagatcttggacacatcctctcct
gaaatcagcagctccaccgaggtccaggtggagggggtgcccaacatctcagagagcgcc
acaggaaaagtggacgaatttttcctctttggttccttcctggaggctacgatgattgac
aggaaaatcggtgataagccgatcaactttgaggtcaccataggttactatggaaacgag
attgatggagctctccaaccgaaaacgaagggggaaaggggcaaagataagggggacgag
gaggagacggagctgatccacaactccagtgaggaagagatggatgacgatggagacctg
acctcagtggcaaccaccccccccatgaagcctgtcatcactgaccggaactactttcac
ctgccctactttgaaaggaagccctgcatctacattaaaagctggtggcaggatcagaaa
aggaggctgtacaattctaacatcattgacaacattgctgataaactggaggatggactg
aacgatgtccatgagatcatcaaaacggagaaggcctatcctgagcgcaggctgcgagga
gttctagaggagctcagccagggatgcagccagtttctgacactagcaaacaaagaccag
aaccagtctggaagaaccaaactggacaaagagaggctgaagctgtgtctgtcagaagtg
gaagccataggtgtgcaggccaaggccatgaggtcccaggtcaagaaaagcaccgtcaga
gacaaactcaaactttcccagaacttcctttcgaagctgcgcttcctggctgatgagcca
cagcacagcgttccggatgttttcatatggatgataagtaatggcaagcgtattgcgtat
gcccggatcccatccaaagacattctgtactccagcatagacgaggaaaaggggaaggac
tgtggaaaagtcaaaaccattttcctaagaatccctggaaaaaaaggttttgggcctgct
ggatggactgtacagagcaagatagagatttacctgtggctgggtctgaacaggcagcgt
aaagactacctcagtggtctgccaaacggctttgaggagaacaagctgtctaaagggccc
ggcctgccgtccacgcctcctatcagcctgacctatatgatgaagcagatcttccagctg
agggtccacatgtaccaggctcgcagcctgtttgctgctgacagcacgggtctgtctgac
ccctttgcccgagtcttcttctccactcagagccaggtcaccgaggtgctggcagaaact
ctctgcccaacttgggaccagctgctggtttttgagaatgtggagctgtttggagaggct
gccgagctgagagatgaccctcccattattgtcatagaaatctatgatcaagacacagtg
ggtaaggccgactttatggggagaacctttgccaagcctgtggtcaagatggctgatgag
cactatggtccaccacgcttccccccccagctggagtactaccagatctatcgtgggaac
tgtgcagctggagaaatgctggcagcctttgagctgctgcagattggccccaatggaaaa
gctgatctcccccccatcgatggtccaacagacatggatcgtggcccaatccttccagtg
ccgcttggtatcagaccagtcctcagcaagtacaggattgaggttttgttttggggtctg
agagacttgaagagggtgaaccttgctcaggtggaccggcctcgagtagatattgaatgt
gccgggaaaggagttcagtccgctctcatccccaacttcaagaagaaccccaacttcagc
acccttgtcaagtggtttgaagtggatttgcctgagaatgagttacttcaccccccgttg
aacattcgcgtggtggactgcagagcttttggacgatatactttggttggttccaacgct
gtcagtagcctcaggaagttcatctacaggggacaggacaagcaggcgaacagctggtca
accacagaagaaattatcgttgtcagcatggagcaagaacctgcctttaagaagatggag
actgtcgtcaaactggactcgtgctctgaagctgttgtcaaagtggaggatgatgacaag
gatgaaaagggcaaaaagaagaagaggaagaagttggacgaacctgaagaggaggaactg
gatgagagtatgctggactggtggtccaagtactttgcctccattgaaacgctgacagag
gcactcaagtctcaggaagcggctctgtccgactcggaggataaggaagacatggactta
gcagatggaggagacattaaacccgatgatggtcctgtgaaaagcaacaggaaaggaaaa
acaaagaaggacaagaagaaagccggctttgatgcctttgggagaaaaaagccaaagctg
gatgagttaaaggtttatcccaaagaattggaaagtgagtttgataacttcgaggactgg
ctgcacactttctacctgttcagaggaaaagcaggtgatgatgacgaccagactgtgacg
gatgaagaccggattgtcgggaagttcaaaggctccctgtgcatgtacaaagtgtcagat
gacacgcccagagacatgagttttgattccaacatgggaatgtttcaaaacattcccaac
aatgatccagtaaacgtcctggtccgcatctatgtagtcagggcgaccgatctgcatcca
gcagacataaacgggaaagcggatccctacattgcaatcagactaggaaaaacagagatc
aaggataaggaaaactacatttccaaacagctaaaccctttgtttggaaagtcttttgat
gtggaggccaccttcccgatggactctacactgacggtgtccatctatgactgggacctg
gtgggaactgatgatctgattggagaaaccaagatcgacttggagaaccgcttctacagc
aaacacagagccacgtgtggtgttggaaacaagtactccattcatggctacaatgtgtgg
cgggacccgatgaaaccaacacaaatcctggctaaactgtgcaaggacgggaagctggac
ggaccacactacggccctggaggaagagtcaaagtggagaaccgggtcttcatggcgccc
actgagattgaggatgaaaacggtttgaagaagaagacggatgaacatctcgctctgtgc
gttctgacccactgggaggaaatcccacgagttggctgcaaacttgtccctgaacacgtg
gagactagacccctgctccaccctgacaagccaggaatcgagcaaggcagaattgagctg
tgggtggacatgttccccaaagaaatgactgcacctggtcccgcacttgacatttcccca
aggaaacccaagaagtttgagctgagggtgatcatctggaacacagacgaggtcgttctt
gaagacgacgatatcttcacaggagaaaaatcaagtgatatcttcgtccgaggctggctg
aaaggacagcaggaggacaagcaggacactgacgtacactatcactccatcactggggag
ggaaacttcaactggcgctttgtctatcccttcgattacctaatggctgaggagaagatc
gtcatctcaaagaaggagtccatgtttgcctgggatgagaccgagtacaagattccgcct
cggcttaacctacaagtgtgggatgccgaccatttctcagcagatgatttcctgggtgca
atcgagctcgacctgaaccgcttccctcgtggagcaaagactcccaagcagtgcagcatc
gagatggtgaccaacgaagctgagatgcccatggtgtccatcttcaagcagaagaggatc
aaaggctggtggccttttgtggcccgaaatgaagaggacgagtttgagctcacgggcaaa
gtggaagctgagctgcatcttctgacaggagaggaggcggagaaaagtccggcaggggag
ggacgcaacgagccagagccgctggagaaacccaaccgtccagatgtggcactgctctgg
tttctcatccccctcaaagcagcaaagcacctggtgtgcgaccagtacaggtggctgaca
atcaagattgtgacggctctcctgctgctcgccatcctgggtctgttcctgtacaacatg
ccgggctacatggtgaagaagatgctgggggcttga
DBGET
integrated database retrieval system
