Oryzias melastigma (Indian medaka): 112142610
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Entry
112142610 CDS
T07439
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1 isoform X2
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04530
Tight junction
oml04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112142610
09142 Cell motility
04810 Regulation of actin cytoskeleton
112142610
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112142610
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112142610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
PDZ_6
SOS1_NGEF_PH
PDZ_2
PH_11
Motif
Other DBs
NCBI-GeneID:
112142610
NCBI-ProteinID:
XP_024121858
Ensembl:
ENSOMEG00000014598
LinkDB
All DBs
Position
LG14:complement(16156315..16218855)
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AA seq
1634 aa
AA seq
DB search
MGNVESQDGVRNYYGDEAGHLSRKHTSRSFRLPNTHGVPRRPRHSPSMNQEHRNSATSTR
SSSTPSIPQSLAENGLEPFNAADELSEFGANPHWTQRVAMTMRPESYQQDDDPLATPTPE
TSEADTVPRDGGEDSAGEGEAAGVERYLQRVTEGSRDGGNFKKKRSKSADMWREDSLEFS
LSDLSPEHLTSTEEMIDGGEEEEEEHFTCPRGSERASSLDHLCSQSPGRRGQRGRYIKSH
RVECNGDGQEDGLMSPNEEDGGGYEAFTLPCRRSHCLSEGLSILGIPNAPCPTFQGRRAQ
TTQNISGVLSEGSEYDDSGIDGVAADGDGDLVGRRCKAMSASFSVYSATESCVFNGSDSG
SSSAGGGDGRGGEGGRGGVYENFRKELNSQVWRNQGPDCLEEAGSAVSDEQSSGTLSTAY
PSDAVMGCAQGTVRKAGVLAVKNFLVHKKNKKVEPATRRKWKNYWVSLKGGTLFLYESDG
RSGIDNNSVPKHALWVENSIVQAVPEHPKKDFVFCLSNSVGDAFLFQTSGQTELENWITA
IHSACAAALARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLSTVTDAKKRKTIL
EQISLWEQNLERFHIDLFRCRCYLASLQGSEPPNPKRLLGFASRPTKAAMGRLGIFSVSS
FHALVSARTESSMRRRNQSLTRTFNKRRSRFSSLWGLDTASRRKTKGRPSVDQVFCDDRE
LSRKPLERMFEDSASEISRKTEDSAKSLPQQTTDNDIWVPDYLRPSWVCLPNNQPVLAIV
QPGETTLDVLSSVCKTHAIDPSGHYLRVKVWVDNQTLLYVPKFEEDISDLLYREIEICPK
PSKVIRFDKAESCTTGYGFTVAVIDEEGVQQLHITEIKDGGLASSKGLKAGDEILSLNGK
PASALQMDDMRAAFANHTLTLTVSTLPDLDPEVLCFHPPRRSDRDHDLSTDIFSQSQEDI
LDGVSGLTVDSPDESLEEGPQLDQQTPEDLQENRTFIEIGEKNTDQGTPFSRSLHDMNSL
ERPMSSSSSSSSSSLSPSPVSVLPPTAGTATQRQLSHADKLRKVISELVETEKTYVKDLR
FLIERYRKPLQKEHFLTQDELDVLFGNLGEMEKLQVEFLRTLEDGIRLVPDLDRLEKVDE
FKKVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDPDFKAFLAERNPKQQHSS
TLESYLIKPIQRVLKYPLLLKELYSHTDPDSEEHYHLDVAMKAMNKVASHINEMQKLHEE
YGAVFDQLINEQSVHKKEVPDLSMGDLLLHSTLVWMNPPVNLMKSKKDTELAAFVFKTAV
VFVYKNCSKHRKKIGGTHRASVVDDRDPFRFRYMIATDSLQVRGHANSEATAVCEIVHVK
SESEGRPERIFQLCCSSPDSKKDFLKAVHSILREKQRRQLLKSESLPPNQQYVPFGGKRL
CFLKGVRSSVSRAASAPSRTLSRKRVLMNKITVDSDLIVHGNNNSDSSHRPAPPPLSHHP
PSQPQKPHREDTDRWLEEQFNLGSYEEQCESTEEKVKETDILSDDDEYCKSVRSDSADGL
KAGMEELDLQDENPNKSESEVDRTNDRVDFGSVDSLSPVRLAPLKHCVVGGATNKDRDMI
WVRRDEFTCNGDVF
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacgtggagagccaagatggagtccgaaattattatggtgatgaggcgggacat
ctctcccgcaagcacacatcccgctcattccgccttcccaacacgcatggcgtcccccgc
cgtccaaggcactctccgtcaatgaaccaggagcacagaaactctgcaacctcaactcgc
tcctccagcaccccaagcatcccacaatccttggcggagaacgggttggagcctttcaac
gcagctgatgagttaagcgagttcggcgcgaaccctcactggacacaacgcgttgccatg
acaatgaggccagagtcctaccagcaagatgacgaccctttggcaacgccgacccctgaa
acctcagaggccgacactgttcctcgggatgggggagaagactcggcaggggagggggaa
gcggcaggggtggaaaggtacctgcagcgagtgaccgaaggctccagagatggagggaac
tttaaaaagaaacgctcaaagtcggcagacatgtggagagaagatagcctggagttctcc
ttatccgacctcagcccggagcatctcaccagcactgaggagatgattgatggaggagaa
gaagaggaggaggagcacttcacttgccccagaggttctgaaagagcatcgtctttggac
catctgtgcagccaaagtcctggccgacgggggcagaggggtcggtatattaaaagccac
agagtggagtgcaatggagatggacaagaggatgggttgatgtctcctaatgaagaggac
ggcggcggatacgaagcttttactctcccttgtcggcgctctcactgtctctctgagggc
ttgtcaatactggggatcccgaatgcaccatgccccaccttccagggacgacgggcgcag
accactcagaacatttctggtgtcttgagtgaggggagcgagtatgacgacagcgggatt
gatggcgttgctgcagatggagatggagatctggtggggcggaggtgtaaggccatgtca
gcctccttctcagtgtactcggccacggagagttgtgtttttaacgggagtgacagtggg
agcagcagcgcaggtggaggagatggacgaggaggagaaggaggcaggggaggagtatat
gagaattttcgtaaggagctgaacagtcaagtctggaggaatcagggcccagactgtctg
gaggaagcaggctctgctgttagtgatgagcagagtagtggcacactcagcactgcgtat
ccatctgacgctgtgatgggctgtgcacagggcacagtcagaaaagctggggttctggct
gtgaagaacttcctggttcataagaaaaacaagaaggttgaacctgcaacacggcgcaag
tggaaaaactactgggtgtctctgaagggcgggaccctttttttgtacgaatcagatggt
cgctcaggcatcgacaataacagtgttcccaaacatgctctttgggtggagaacagcatt
gtccaagcggtacctgaacaccccaagaaagactttgtcttttgcctcagcaactcggtc
ggagatgccttcctgttccagacatcgggccagactgaactggagaactggattactgcg
atccactctgcgtgtgctgctgctctcgctcgacagcaccacagggaggacaccgtgcgg
ctgctccggaccgaaatccgcaagctggagcagaagattgacatggacgagaaaatgaaa
aagatgggagacatgcagctttccacagtcactgatgcaaagaaaagaaagaccatactt
gaacagatttctctgtgggagcagaacttggagcggttccacatagatctcttccgatgc
cgctgctacctggccagcctgcagggaagcgaacctcccaaccccaaacgtcttttgggt
ttcgcttcacgtcctacaaaagcggccatgggtcgtctgggcatcttttctgtctcttct
ttccacgcactggtgtcggcccgcactgaaagcagcatgaggaggcggaaccagtccctg
actcgcaccttcaataaacggcgaagtcgcttctcctccctctggggtctggacaccgcc
tccaggaggaagaccaaggggcggccttcggtcgaccaggtgttttgtgatgacagggag
ctctccagaaaacctctggagcgcatgtttgaagattctgccagtgagatatctagaaaa
acagaagattctgcaaaaagtcttcctcagcaaaccacagacaacgatatttgggttccc
gactacttaaggccctcctgggtatgtttaccaaataatcagcctgtcctggccattgta
cagcctggtgagacgacgctggatgtcctgagttcagtatgcaagacccacgccatcgat
ccatctggccactacctccgtgtaaaagtttgggttgacaaccaaacgcttctttatgtt
cccaaattcgaagaagacatatctgatttgctttacagagaaattgagatttgtcccaaa
ccttccaaagtgatccgttttgacaaagcggagtcgtgcaccactggatacggtttcact
gttgcagttatagatgaggagggtgtgcagcagcttcacattacagaaatcaaagatgga
ggtctggcttcatctaaaggtttgaaagcaggagatgagattctatccctcaatggtaaa
cctgcgtccgccctccaaatggatgatatgagagctgcgtttgcgaaccacacgcttacc
ttgaccgtcagcaccctgcccgacctggacccggaggtgctgtgcttccacccacccagg
cgctctgacagggaccatgatctctccacagatatcttctcccagagccaagaggacatc
ctggatggtgtgtccggtctgactgtggacagtccagatgagagtttggaggaaggacct
cagcttgaccagcagacgcctgaagatctgcaggaaaacaggaccttcatagagatcgga
gagaagaacacagatcaagggaccccgtttagtcgaagccttcacgacatgaactcactg
gaacgccccatgtcgtcgtcttcatcctcgtcttcatcatccctttcccccagtcctgtg
tcggtcctgccgcccacggcggggaccgccacccagaggcaactctcccacgccgacaag
ctgcgcaaagtcatcagtgaattagtggagacggagaaaacttacgtcaaagacttgagg
ttcctcatagagcgctaccggaaaccgctgcagaaagagcattttctgacgcaagatgag
ctggacgttctgtttggaaacctcggcgagatggagaagttacaggtggagtttctgcga
acgctggaagacggaatcagactggtgcctgacttggacaggctggagaaggtggacgag
tttaagaaggtgctgttctctctgggcggttcgttcctgtattatgctgatcgcttcaag
atctacagtgcattctgcgcctcgcacaccaaggtccccaaagtcctcgctaaagccaaa
acagaccccgattttaaagccttcctcgctgagaggaaccccaaacagcaacattcttcc
actctggagtcgtacctgatcaaacccatccagcgagtcctcaagtacccgctgctgttg
aaggaactctactctcacaccgaccccgacagcgaggaacactaccacctggacgttgca
atgaaggccatgaacaaagtcgcgagtcacatcaacgagatgcagaagcttcatgaggag
tacggagccgtctttgaccagctcatcaacgagcagagtgtgcacaaaaaagaggtcccc
gacctctccatgggggatctcttgttgcattccactctggtttggatgaaccctccagtc
aatttgatgaagagcaaaaaggacacagaattagctgcttttgtgttcaaaaccgccgtt
gtgttcgtgtacaaaaactgctccaagcacagaaagaagattggaggaacccatcgagcg
tctgtggttgacgacagagatcctttccgcttccgttacatgatcgcaactgattctctg
caagttcgtggccatgcaaactctgaggcgacagcagtttgtgaaatagttcacgtgaag
tctgagtctgagggaagacctgagagaattttccagttgtgctgcagttccccggacagc
aagaaggacttcctcaaagccgtccactccatcctccgggagaaacaacgtcgccagtta
ctgaagtcggagtctttgccccccaaccagcagtacgttccttttgggggtaaacgcctt
tgcttcctcaaaggtgtgcggtcgtccgtgagcagagcagcttcagctccatctcggacg
ttgagtcgcaaaagggttctgatgaacaagataaccgtggactccgacctgatcgttcac
ggcaacaacaacagtgactcctcccaccggccagctcccccgccgctctcccatcatcct
cccagtcagccccaaaagccccaccgggaagacacggatcgatggctggaggagcagttc
aacctgggcagctatgaggagcagtgcgaaagcaccgaggagaaggtgaaagaaaccgac
attctgagcgacgacgacgagtactgcaagtctgttcggtccgactccgccgacggtttg
aaggccggaatggaggaactggatttacaagacgagaacccgaacaagtcggaaagcgaa
gttgaccggacgaacgacagggtggactttggttctgtggattctctctcacctgtgagg
ctagcgcccctaaagcactgtgtagtgggaggggccaccaacaaggacagggacatgatc
tgggtgcggcgagatgagttcacctgcaacggcgacgtcttctga
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integrated database retrieval system
