Oryzias melastigma (Indian medaka): 112143075
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Entry
112143075 CDS
T07439
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112143075 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112143075 (smg6)
03032 DNA replication proteins [BR:
oml03032
]
112143075 (smg6)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
112143075 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
112143075 (smg6)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
112143075 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
DUF1455
Motif
Other DBs
NCBI-GeneID:
112143075
NCBI-ProteinID:
XP_024122600
Ensembl:
ENSOMEG00000010838
UniProt:
A0A3B3BX49
LinkDB
All DBs
Position
LG14:17840013..17854743
Genome browser
AA seq
1620 aa
AA seq
DB search
MANELDRVRISAAELRAEALNSSNITECVTVEHQNHQVQKHHKKRESKRPDLQRYQPAAG
SGRCPRDSEEGETAQNHLLPSDTSKLDQSIRNEKKGEAGSVSNRQGCTDGESSTKKGEES
TMKGDGSLSKNCRESSLAHLKGDAFDEEHQEVEKAAKTVKKARKPDREFYQPGTRRNIQG
KDLSAGKDQDTPQTRKHEQNPEPQAQLSAKTRDKDKSTQKQRGKDKAKPRQNVDIISKCS
EESRGGEKPVLPIDLSVKNITSNVEKLSIKEKDKTRGVGKASGESSCRGRPVTDKEKKGQ
PTETKDDAKKGEEREKEKKWESKGENNSSRRKSNSSTTEKDRNKRRLEVDGKMTNKASET
QQSKGRDNRKQVRDRKDSSTSTDAGKHDKTQRNTDRSDRHGSSPVAIASKRYSRSDIRHS
RNRTYSSSSASSATSQDGPGRGLNPGHNADRMDYRDGRRGHLQSWTNSRHSSSESLERSD
LSERAEERRKRRRRGGEGKKNAERQGEDRNAPKSNKGRGQITLKSSEEKHLSAQTQSGDT
QNHKQGLVPRGRGGGILVLPARTDISHSPEIGQRLFSGGLRGGAAGRSRGGRGGMRRLWD
PNNPDQKPALSNTQPSLHSSLKHPVYLQSGAVHGQLHFLDTDDEVAGSPPVQGEHFQSQQ
AAAMAYYKFQSSDNPYCYPMATNSLHSPNTPTSHSFPYAYNMGPYQIPQSNGMYASHGAG
QLSGSYRGYSQSGGEGSLNVEDTEQQTRGEMGRMLRAADAHEVQLSNLMSRDRVSADGLD
RMAQLRADLLRLYEQVILTDIEFSDSQNVDQALWKNVFYQVIERFRQLLKDPSYDNTPHI
RNMLLTLLDEGAQFFDTLLQKLQTVYQFTLEDYMDGMAIRARPLRKTVKYALISAQRCMI
CQGDIARYREQATDSSNYGKARSWYLKAQQIAPKNGRPYNQLALLAIYTKRKLDAVYYYM
RSLAASNPILTAKESLMSLFEEAKRKAEQLERRRRQENEGGSQGPAVRGRRKDEESSRVE
IWIRPNGQTATPSNKRGGSESSRDSEQDGELGSLSATDLKKRFILSFLHAHGKLFTKVGM
ESFPGVASRVIQEFKTLLQHGASLLGSTNILQIITINMFAVHNAQSKGEEGETRSVLQEQ
STALGLGMFALLVQRCTELLKEIPAESVQVADGEEEEEKTGEPKGMVRVSAFPLDLRELL
PGIKVWSDWMLGHPHQWNPPPCGIDCSPDVWQYLANLCNVLAHVDHEEVLLYKVDSDELE
SDEELTVLQLKEDKLLAGFVPLLAAPQEPCYIDKHTDMAIAADCKRVTVLKYFLEALCGQ
EEPLLAFKGGKYISVATSASNSQLVDTRNRQDSLTENEQADVILEAESSLSASEEEEEDF
DGGGHSENDIRQLKARHHALTNKLAQRQKRWDKIQAVLQTGGQLELEVRPLFLVPDTNGF
IDHLEGLKKVLQCGSYIIVVPLIVITELDGLAKGQDTFGGGLGSRGRSAGSRGNYNSAAH
VRAVQEKARLAVAFLEKGFEAREPCLRALTSRGNQLESIAFRSEDTSGQQGNNDDVILSC
CLHYCKDKAKDFMPPQKNGTVRLQREVVLLTDDRNLRVKALTRNVPVRDIPSFLSWAKVG
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaactggacagagtgcgaatctcagctgcggaactacgagctgaagctttg
aactcatccaatattactgagtgtgttacagtggagcatcaaaatcatcaggtccaaaag
catcacaagaagcgtgaaagcaagcgtcctgatcttcagcgttaccaacctgctgccgga
agtggacgttgtccccgtgacagtgaggaaggagaaactgctcaaaaccacctccttcca
tcggacacctcaaaactggatcagtcaatcaggaacgaaaagaaaggagaggcaggaagc
gtctcgaacagacaaggatgcactgatggtgaatccagtaccaaaaaaggggaagaaagc
accatgaaaggggatggcagccttagtaaaaactgcagagagagcagcctggcgcatctt
aaaggagatgcatttgatgaagagcatcaagaagtagaaaaggctgctaaaactgtaaag
aaagctcgaaaaccagacagagagttttatcaaccgggaactcgcagaaatattcaagga
aaggatttaagtgctggaaaagatcaagatacccctcagactaggaagcatgagcaaaac
cctgagccacaggcccagctaagtgcaaaaacaagagacaaagataaatctacacagaaa
cagagagggaaagataaagctaaaccaagacagaacgtggatataatttccaaatgcagt
gaggaaagccgaggtggagaaaagcctgtgttacccatcgacttatctgtaaagaacatt
acaagcaacgttgaaaaactgagcataaaagagaaagataaaaccagaggtgtaggcaaa
gccagcggagagtcatcatgcaggggacgaccagtgactgataaagaaaagaaaggtcaa
cctactgaaacaaaggacgatgcaaaaaagggagaggagagagaaaaggaaaagaagtgg
gaatctaaaggagaaaataacagtagcagacgaaaaagcaattcaagtacaacagagaag
gacagaaataagaggcgattggaagtagatggaaaaatgacaaataaagcatctgagacg
cagcaaagtaaaggaagagataatcgcaaacaagtcagggacagaaaagacagcagcact
tccacggatgctgggaagcatgacaagacgcaaagaaatacagaccgaagtgatagacat
ggatccagtccagttgctatagcatccaaacgctattctagatcagatattcgtcactca
cgaaatagaacttacagcagtagctcagccagcagcgcgacgagtcaagatggtcctggc
cgaggactgaaccctgggcacaatgccgacaggatggactaccgtgatggacggagaggc
catttacaaagctggacaaacagtaggcattcttcttcagaatctttggaaaggagcgac
ttaagcgagagagctgaggagagaaggaagagaagaagaagagggggagaagggaaaaag
aatgcagagagacaaggggaggacagaaacgcgccaaaatccaacaaaggcagggggcag
ataactttaaagtcttctgaagaaaagcatttgagtgcccagactcagagcggggacacg
cagaaccacaagcaaggtttggttcctcgcggcagaggcggaggcatcctggtgcttcct
gctcgcaccgacatctcccattcacccgagatcggacaacggcttttttccgggggactt
cgaggaggagcagctggcaggagcagaggaggtcgcggaggcatgaggcggctgtgggat
cccaacaacccggatcagaaacccgctctttcgaacactcagccctcactccattcttcc
ctgaaacatcccgtatatcttcagagtggagctgtccacgggcagcttcattttctagac
acagacgatgaggtagcgggcagtcctccggtccagggagaacattttcaatcccagcag
gctgctgctatggcttactataaattccaaagttctgataacccctattgctaccccatg
gccaccaatagtcttcacagtcccaacaccccaaccagccacagctttccgtatgcttat
aacatgggcccctaccagatacctcaatctaatggtatgtatgcgagccacggtgctggt
cagctcagtggaagctacaggggatattctcagtctggcggagaaggttctttgaatgtt
gaagatacggagcaacaaaccagaggtgaaatggggaggatgctgagggctgcagatgca
catgaggtccagctgagtaacctgatgtcgagggacagagtgagcgctgatggactggat
cgcatggcccagctcagagctgaccttttgagattgtacgagcaagtcatcctgacagac
atcgaattctccgactctcagaacgtggatcaggcgttgtggaagaatgtgttctatcaa
gtgatcgaacgttttcggcagcttcttaaggacccctcctacgacaacaccccccacatc
aggaacatgctgctcactctgctggatgagggggcacaattcttcgatacactccttcag
aagctgcagacggtgtaccagttcacgttagaggattatatggatgggatggccatcagg
gctcggccgttacgcaaaacggtgaagtatgcgctcataagtgctcagagatgcatgatt
tgtcagggggatatagcgcgctacagagaacaagccacagattcctcaaactacggcaaa
gctcgcagctggtatctaaaagctcaacagattgcccccaaaaatggacgaccgtataac
cagctggctcttttggcgatctacacaaagcggaaactagatgccgtttattactacatg
cggagtttagctgcttccaacccaatcttgacggcgaaggaaagcctgatgagcctgttt
gaggaagctaagcgtaaggcagagcagcttgagcgaaggagaagacaggaaaatgaaggg
ggctcccagggtccagcagtaagagggagaagaaaagacgaagagagctcacgtgtggag
atttggattcgtcctaacggtcaaacagcaacgccctctaacaaaagagggggcagcgag
tccagcagagactctgagcaggacggggagctgggcagtctaagtgctactgatctaaaa
aagagatttattctgagtttccttcatgctcacgggaagctcttcaccaaagtaggtatg
gagtcctttcctggcgtggcgagccgtgtcatacaggagtttaaaacactgctacaacac
ggcgcctcgctgctgggaagcaccaacattttacaaatcatcacaatcaacatgtttgct
gtacacaatgctcaaagcaaaggcgaggagggagaaacccgatccgttttacaagaacaa
agcactgcattggggcttggcatgtttgcattgctggtgcagcgctgcacagagcttctt
aaagagatccctgcagaatccgtccaggtggcagatggagaggaggaggaggagaaaacg
ggggagccgaaggggatggtcagagtttctgccttccctttggatctgagggaactgctg
ccaggcatcaaagtctggtctgactggatgttaggacacccacaccagtggaacccacca
ccatgtggcatagactgcagccctgatgtttggcagtacctggctaacttgtgtaatgtg
ctggcacacgtggaccacgaggaagtgctgctgtacaaagtcgatagtgacgaattggaa
agcgacgaggaattgacggttcttcagttgaaggaagacaagctgctcgctggctttgta
ccgctgttagctgcaccacaagagccctgttacatagacaaacacactgacatggcaata
gcagccgactgcaagagagtgacggtactgaagtattttctagaggctttgtgtggacaa
gaagagcctctgctggccttcaagggaggaaaatacatctctgtggcaacttccgcttca
aacagccaattggtcgatacaagaaataggcaggactctttaacagaaaacgagcaggcg
gatgtgatactggaggcagagtcgtcgctttcagcatcagaggaagaggaggaagacttt
gatggagggggacacagtgagaatgacatccgacagctgaaggctcgacatcacgccctc
actaacaaactggcacagcggcagaagcgttgggacaaaatacaggctgtgctgcaaaca
ggtggtcagttagaactggaggtccgacctctctttctggtccctgataccaacgggttc
attgatcacttggagggcctgaagaaagtccttcaatgtggaagttatataatagtcgtg
ccattaattgtgattacagagttggatggcttggccaaaggtcaggacacttttggtgga
ggactgggttctcgtgggcgcagcgccggcagtcgcggcaattacaacagtgcagcccac
gtgcgggcggtgcaggagaaggctcgcttagctgtggctttcctagagaagggatttgaa
gcccgggaaccgtgcctccgagccctgaccagccgaggaaaccagctggagtccattgcc
ttcagaagtgaagatacttctggacaacagggaaacaacgacgatgtcattttatcctgt
tgtcttcattactgcaaagacaaagcgaaagatttcatgcctccacagaaaaatgggaca
gtgagacttcagagagaggtggtgctcctgacagatgaccgcaacctgcgtgtcaaagcg
ttgacgcgcaacgttcccgtgcgcgacattccctccttcctcagctgggccaaagtgggc
tga
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integrated database retrieval system
