Oryzias melastigma (Indian medaka): 112144528
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Entry
112144528 CDS
T07439
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112144528 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
112144528 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112144528 (lsm3)
03041 Spliceosome [BR:
oml03041
]
112144528 (lsm3)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112144528 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
112144528 (lsm3)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112144528 (lsm3)
Complex C
U2 snRNP components
112144528 (lsm3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
112144528
NCBI-ProteinID:
XP_024124843
Ensembl:
ENSOMEG00000001915
UniProt:
A0A3B3B792
LinkDB
All DBs
Position
LG5:complement(15952767..15954874)
Genome browser
AA seq
102 aa
AA seq
DB search
MADEAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagctgagcagcaaccatccaccaacacagttgaggaaccgcttgatcta
atcaggctcagtctggatgagcggatctacgtaaaaatgaggaatgaccgggagctccgc
ggccgcctccatgcgtatgatcagcatcttaacatgatcctgggagacgtggaagagacg
gtgaccacggtggagatcgatgaagaaacatacgaagaactctacaagtctacaaagcgg
aacatacccatgctgttcgtcagaggagatggcgtggtcctcgtagccccgcccctcaga
gtgggttag
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