Oryzias melastigma (Indian medaka): 112147575 Help Entry 112147575         CDS       T07439                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism oml  Oryzias melastigma (Indian medaka) Pathway oml04115   p53 signaling pathway oml04145   Phagosome oml04148   Efferocytosis oml04350   TGF-beta signaling pathway oml04510   Focal adhesion oml04512   ECM-receptor interaction oml04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oml00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     112147575   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     112147575  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     112147575    04148 Efferocytosis     112147575   09143 Cell growth and death    04115 p53 signaling pathway     112147575   09144 Cellular community - eukaryotes    04510 Focal adhesion     112147575   09142 Cell motility    04820 Cytoskeleton in muscle cells     112147575  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oml04131]     112147575   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oml00536]     112147575 Membrane trafficking [BR:oml04131]  Endocytosis   Phagocytosis    Opsonins     112147575 Glycosaminoglycan binding proteins [BR:oml00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    112147575 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 EGF_CA cEGF TSP1_ADAMTS EGF Laminin_G_3 TSP1_CCN Laminin_G_2 Laminin_G_1 Motif Other DBs NCBI-GeneID:  112147575 NCBI-ProteinID:  XP_024129852 Ensembl:  ENSOMEG00000019222 LinkDB All DBs Position LG22:complement(14961789..14969909) Genome browser AA seq 1172 aa AA seqDB search MMLCGIFLFFMLWSSDGARLAESRDDNSVYDLFELARVNKRQHGVSLVKGADPYSPAYKI LNADLIPQVPDASFRDLLDSIQAERGFLLLLNLKQYKRSRGTLLSVEKTDGSGPVFEIIS NGKANTLDVVYSTENQQQVVSIEEADLATGHWKNITLFVQEDRAQLYVGCEEINVSEMDA PIQTVLSREVADIARLRIGKGSARDKFMGVLQNVHFVFGTTLDAILRNKGCQSGATLTDV MTLDNPVNNSSPAIRTDYTGHKSKDLQSVCGFSCEDIASMFKELRGLNVIVKQLSNELEK VSTESQLLKNQINIHRGVCLHNGIVHNDKDEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSAWSDWTHCSTTCGRGIQQRGRSCDRINSKCEGTSV QTRDCYLQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG RQTKACKKSPCPINGGWGPWSPWDTCSVTCGGGIQTRKRLCNDPAPKYGGKDCIGDATMP QICNKQECPIDGCLSSPCFPGAKCTSSPDGTFKCGKCPLGYTGDGVTCKDIDECKEVPDA CHTHNSVHRCENTEPGYNCHPCPSRFSGPQPYGRGVEQATANKQVCTPRNPCKDGSHDCH KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVANATYHCKKDNC PNLPNSGQEDHDKDGLGDECDSDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV FEANTDQTDTDNNGEGDACAIDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL EHNPDQVDSDSDRVGDKCDNNQDIDEDGHQNNMDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDNDGRGDVCKDDFDQDNVLDIHDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFGGTFFINTDR DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSNTPTRAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVIMYEGKRIMADSGNI YDKTYAGGRLGLYVFSQEMVYFSDLKYECRDT NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgtggcatctttctgttcttcatgctgtggagcagtgatggagcgaggctg gcagaaagtcgggatgataacagcgtctatgacttatttgagctggctcgggttaataaa agacagcatggagtgagtctggtcaaaggagcggatccttacagccccgcgtacaagatc ctgaacgcggacctgatcccccaagtccccgacgcctccttcagggacctcctcgactcc atccaggctgagagaggcttcctcctgctgctcaacctgaagcagtacaagcggtcccgg ggcacgctgctcagcgtggagaagaccgacgggtccggacccgttttcgagatcatctcc aacgggaaggccaacaccctggatgtggtgtactccaccgagaaccagcagcaagtggtg tccatcgaggaggcggacctggccacggggcactggaagaacatcaccctgttcgtgcag gaggaccgggcgcagctgtatgtgggctgcgaggagatcaacgtgtctgagatggacgcc ccaatccagaccgtgctgtcccgggaggtggctgacatagctcgactaaggattggaaag ggatcagcaagagataaattcatgggggtactccagaatgtgcactttgtgtttggtacc actcttgatgcaattctgagaaataaaggatgccaaagtggagcaactctaaccgatgtc atgaccctggacaacccagtcaataactccagccctgccatcaggaccgactacacaggt cacaaatccaaagacttgcagagtgtctgcgggttctcttgcgaggacatcgccagcatg tttaaggagctcaggggactcaacgtaattgtcaaacagctgtcgaacgagctcgaaaaa gtgtccacagaaagccagctcctgaaaaatcaaattaacatccacagaggagtctgcctc cataacggcatcgtgcacaacgacaaagacgagtggacagtggacgactgcacagagtgt acctgtcagaactctgctactgtgtgccgtaaaatctcctgcccccttattccgtgtgct aatgccaccgtacccgatggagaatgttgtcctcgctgtggaacaccgagcgattacgca gaagatggctggtccgcctggtctgattggacccattgctccaccacttgtgggcgtggt atccaacagcgtggacgctcctgtgaccgcatcaatagcaagtgtgagggcacctctgtc cagacccgggactgctacctacaggagtgtgacaagcgcttcaaacaggatggaggctgg agccactggtcaccctggtcttcatgctctgtgacctgtggcgagggagtcatgacccaa atccgcctctgcaactcccccacaccccagatgggaggaagggactgccaaggcgaggga cgtcagaccaaagcttgcaagaagtcaccctgtccaatcaatgggggttggggaccttgg tcaccatgggacacctgctctgtcacctgcggtggaggaatccaaacccgaaaacgcctc tgcaatgatcctgcgcccaaatatggtggaaaagactgtattggagatgccaccatgcct caaatttgcaacaaacaggaatgcccaattgatggttgtctttccagtccgtgcttccct ggagcaaagtgtaccagctctccagacggtaccttcaagtgtggaaaatgtcctcttggc tacactggtgatggggttacatgcaaagacattgatgaatgcaaagaagtcccagatgct tgccacactcataatagcgttcatcgctgtgagaacactgagccaggatacaactgtcac ccttgcccctcgcggttctctggtcctcagccctacggaagaggagtggagcaggcaacc gcgaacaaacaggtttgcactccccgtaacccgtgcaaagatggtagccacgactgtcac aaaaatgcaaactgcatctacttgggcgtgtactccgagtccatgttccgctgcgagtgc aagccaggatatgctggtaacggccggatatgtggagaggactctgaccttgatgggtgg cccaacactgacctaccatgcgtggcgaacgccacatatcattgtaaaaaggataactgc cccaaccttcctaactctggccaggaagatcacgacaaagatggcctgggtgatgaatgt gacagcgatgatgacaatgatgggatccctgatgacagagacaactgcccaagagtttac aacccagcccagtatgatgcagaccgtgacgatgttggggatcgatgtgacaactgtgtg tttgaagccaacaccgaccaaacagacactgacaacaatggagagggcgacgcctgtgct attgacatcgatggtgatggcattctgaatgagaatgacaattgcccgtatgtgtacaac gtggaccagagagacactgacagggatggggtgggagatcactgcgataactgccccctg gagcacaatccagatcaggttgactctgactcagatcgagtgggagacaaatgtgacaac aaccaggacattgacgaagacggtcaccagaacaacatggacaactgcccgtacatcccc aacgccaaccaggccgaccacgacaaggatggtaaaggtgatgcctgcgaccatgacgac gacaatgatggcatcccagatgacaaagacaactgcaggctggcctttaaccctgatcaa ctggactctgataatgatggccgtggcgatgtgtgcaaagatgattttgaccaagacaat gttctcgacatccacgatgtgtgccccgagaactttgccatcagtgaaactgacttccgt aggttccagatggttcctcttgatcccaaaggcacctctcagattgaccctaactgggtg gtgaggcaccagggcaaagagctggtacagaccgtcaactgcgacccaggcatcgctgtt ggttacgatgagttcagtgctgtggatttcggtgggaccttcttcatcaacacagacaga gatgacgactatgcaggatttgtgtttggctatcagtccagttcccgcttctacaccgtt atgtggaagcaaatcacccaaacgtactggtctaacactcccacaagagcgcagggatat tccggcctttcaatcaaagtagtcaactccaccacagggcctggtgagcacctgaggaac gccctgtggcataccggagacacccccggacaggtgcgcactttgtggcacgaccccaag aacattggctggaaggacttcactgcctacagatggcatctgacccacagaccaaagacc gggcttatcagagtgatcatgtacgaaggcaaaagaatcatggctgattctggaaacatc tatgacaagacatatgccggcgggcggctaggcttgtatgtcttctctcaagaaatggtg tacttctcagacctcaaatatgaatgtagagatacataa

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