Oryzias melastigma (Indian medaka): 112148273
Help
Entry
112148273 CDS
T07439
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112148273 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112148273 (kdm2ba)
04121 Ubiquitin system [BR:
oml04121
]
112148273 (kdm2ba)
03036 Chromosome and associated proteins [BR:
oml03036
]
112148273 (kdm2ba)
Enzymes [BR:
oml01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
112148273 (kdm2ba)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
112148273 (kdm2ba)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
112148273 (kdm2ba)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
112148273 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
112148273 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
LRR_4
Motif
Other DBs
NCBI-GeneID:
112148273
NCBI-ProteinID:
XP_024131000
Ensembl:
ENSOMEG00000013113
LinkDB
All DBs
Position
LG9:complement(24943525..24953897)
Genome browser
AA seq
769 aa
AA seq
DB search
MALSMSGEDEEYESESEQQRAANRPKPKMGTTSTVKLPSNRSTSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLQDDEDK
FNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKSPLVLKQKRG
PGFKYASNLPGSLLREQKPGKEEGDVSSVPKRKPDREETPRQRLEDSIHRQPPLLSPSNL
PRSRPEDKLRKKRKLFDDEEEEDLSVKRKEIKTEEDDEDTYEDDDDEVREQFRSSIDRKG
RFGDTEDEWDYKDSKMDHLNPSIRTPLGDSDQSHCSSPQAGPSSEGGSETQEKGHRPKAR
RKRRLPNRDLSRELSKELNQEIQKTEDSLANENRQPLKVEPEMENEEPKRLFRNGNELAD
QRSHLKTKEMNGTPWELRHFYPSRITPLGFNRSTPTTRPVPPRSPPKCVQMERHVIRPPP
ISPPPDRLPLKDGKAHVMQREVWMKIFSYLTHQELCVCMRVCKTWNRWCCDKRLWTKIDL
NRCTSITPLMLSGIVRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLKLSGCSWAAVSAL
CTSSCPLLRTLDIQWVEGLKDAQMRDLLSPPTDNRPGQLDNCCKLRNVEDLRLAGLDITD
ASLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAAGTTTRDSLTEINLSVCNRVTDHSLS
FFKRCGSICQIDLRFCKQVTTTACERFIAEMSVSVPFRLKEEKLLQKTS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcaatgagtggagaggatgaggaatacgagtcggagtccgagcagcagcgg
gcggctaaccggcccaaacccaagatggggacgacgtcgaccgttaagctgccgtccaac
cgcagcacgtccggagccaggcggaggcggacgcgctgccgcaagtgtgaggcttgcctg
cggaccgaatgcggagagtgtcacttctgcaaggacatgaagaagtttggtggaccggga
cgcatgaagcagtcgtgcatcatgaggcagtgtatcgcgcccgtcctgcctcacaccgca
gtgtgtgttgtttgcaaagaggcagggaaggaggacacacttcaagacgatgaggacaaa
ttcaactttatgttaatggagtgctccatctgcaacgagattgttcatcccaactgcctc
aaggtgagtgacgcctcaggagtggtgaacgatgaactccctaactgctgggaatgtcca
aagtgcaaccatgctgggaaaagtggaaaatcccctttggtattgaagcaaaaaaggggt
ccggggttcaagtacgcctccaacctccccggctccttgctgcgggaacagaaacctgga
aaggaggagggagacgtttcgtccgtacccaaaaggaagccggaccgcgaggaaacgccg
aggcagaggctcgaggattccatccaccgacagccacctctgctgtcccccagcaacctg
ccacgctccaggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgaggag
gaggaggatctcagtgtgaagaggaaggaaatcaagaccgaagaggatgatgaagataca
tatgaggatgacgatgatgaagtaagggagcaattccggagcagcatagatagaaaaggg
cggtttggagacacagaagatgaatgggattacaaggactcaaaaatggatcacttgaac
ccttccatcagaacgcctctcggagacagcgaccaatcccactgcagctctccacaggcc
ggtcccagcagcgagggcggcagcgagacgcaggagaagggtcaccgtccaaaagctcga
cgtaagcggcgcttgcctaacagagacctgagccgagaactgagcaaagaactgaaccaa
gaaatccagaagacggaggactccctggctaacgagaaccggcagcctctcaaggtggag
ccagagatggaaaacgaggagcccaagcggttgtttcgcaacggcaacgagcttgccgat
cagcggtcccacctcaagaccaaagagatgaacgggaccccctgggaactgcggcacttc
tacccaagtcggatcacgccgctcggttttaaccgcagcaccccgacgacgcggccggtg
cccccgcgctccccgcccaagtgcgtccaaatggagcggcacgtcatccggccgcccccc
ataagcccgcctcccgacaggctgcctctgaaagacgggaaagcgcacgtcatgcagcgc
gaggtgtggatgaaaatattcagctacctcacacaccaggagctgtgtgtctgcatgaga
gtttgcaagacgtggaacagatggtgttgtgataagagactttggacaaagattgatctg
aaccgctgcacgtcgatcacccctctcatgctcagtggaatcgtccgcagacagccggtt
tccctggatctcagttggaccaacatttctaaaaagcagctcagctggcttattaacaga
ttaccaggtctgcgagtgttgaagctgtcgggctgttcttgggcggccgtttctgcactc
tgcacctccagctgccctctgctgcgcaccctggacatacagtgggtggaaggactcaaa
gatgcacagatgagggacctcctctcgccgcctacagacaacagaccaggtcagctggac
aattgttgcaagttgaggaacgtggaggacctgcggctggcaggactggacatcaccgac
gcgtccctgcggctcataagtcggcagatgcctttgctgtccaggttggacctgagttac
tgcaaccatattaatgaccagtctgttaacttacttacagcagcagggaccacaaccaga
gactccctcacagaaatcaacctatcagtttgtaaccgcgttacagatcattccttaagc
tttttcaaacgctgtggaagcatctgccagatcgacctccgcttctgcaagcaggtgacc
acgacggcctgcgagaggttcatcgcagagatgtcagtcagcgtaccattcagactaaaa
gaagagaaactcctacagaagaccagctag
DBGET
integrated database retrieval system
