Oryzias melastigma (Indian medaka): 112148880
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Entry
112148880 CDS
T07439
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112148880 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112148880 (c9orf72)
Membrane trafficking [BR:
oml04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
112148880 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
112148880
NCBI-ProteinID:
XP_024132054
Ensembl:
ENSOMEG00000012044
LinkDB
All DBs
Position
LG22:complement(18906742..18921775)
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AA seq
484 aa
AA seq
DB search
MCQDVCTCLFFSSVSGLSWFRLMSSGCPPQSPAVAKLEIAVDGECPLLAATFAYWDNILG
PRVRHIWAPKGDQLMFLSDGEVTFLANHTLNGEILRSAESGAVDVKFFVLAEKGVIIVSL
IFDGELKGDKNTCALSIILPQTELSFYLPLHAVCVDRLKHAIRRGRICMQKGFSIISVLS
SEIVPIMELLASMKSHSVPEDIDIKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSVVV
GSNPEKVNKIVRTLCLFLTPAERKCSRLCRANSYFKYDTGLFVQGLLKDSTGSFVLPYRQ
VLYSPYPSTHIDVDINTVQQMPPCHEHTYKQRQYMRQELSTLWKAESEEDPSPDKIIHTD
ENFTPDLNIFQEVMHKDTLVKCFIDEVFMLKPGLSLRSTYLSQFLLLLHRKALTLLKYIE
DETQKGKKPFRSLRNLKTDLDLKEEGDLNIIMAFAEKLKSGLHSFVFWKPFYTSMQERDA
LTNF
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtgccaagacgtctgcacatgcctcttttttagctcagtgtcaggactctcctggttt
cgtctcatgtcttctggctgtcctcctcaatcccccgccgtggcgaagctagagatcgcc
gtggatggagaatgccctctcttggctgccactttcgcctactgggacaacatcctgggc
ccgcgcgtgcgccacatctgggctccaaagggcgaccagctgatgttcctcagcgatgga
gaggtcacatttctggccaatcacacgctcaatggggagattctccgaagcgcagaaagc
ggcgccgtggatgtgaagtttttcgtcctggcggagaagggcgtcatcattgtgtcgctc
atcttcgatggcgagctgaagggggataagaacacgtgtgccttgtccattattctgcct
cagacggagctgtccttctacctgcccctgcatgctgtctgtgtggacaggctaaagcac
gcaatccgcagaggacgcatttgcatgcagaagggctttagcatcatatcagttctaagc
tcagagattgttcccataatggagctgctggcctcaatgaagtctcacagtgtgcctgaa
gacatagatataaaagacaccgtgctaaacgacgatgacatcggagacagctgccatgag
gatttcctccataaagccatcagttctcatctgcagacgtgcggctgttcagtagtcgtc
ggtagcaacccagagaaagtcaataagattgtgcggactctctgcctcttcctcacccca
gctgagcgaaagtgctctcgcctctgcagggccaactcctactttaaatacgacacaggc
cttttcgttcagggtctgctcaaggattccacaggtagctttgtcctgccctaccgacag
gtgctctactccccttacccaagcacgcacattgacgttgacattaacacggtccagcag
atgccgccgtgccacgagcacacgtacaagcagcggcagtacatgcgacaggaactgagt
acgctctggaaggcggagagcgaggaggacccttctccagacaaaatcatccacaccgat
gaaaacttcacccctgacctgaatattttccaagaagtcatgcataaagacacattggtc
aaatgttttatagacgaggtgttcatgctgaagccaggcctgtccctgcggagcacgtat
ctgtcccagttcctgctgctgcttcacaggaaggctctcactctgctcaagtacatcgag
gacgaaacacaaaagggcaagaagccgtttcgatcgttgcgtaatttaaagacggatctg
gatctgaaagaggaaggagatctgaatatcattatggcttttgctgagaagctgaagtcc
ggactccactcgtttgtgttttggaagccattctacaccagcatgcaggagcgagacgcc
ctcacgaacttctga
DBGET
integrated database retrieval system
