Oryzias melastigma (Indian medaka): 112149543
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Entry
112149543 CDS
T07439
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04530
Tight junction
oml04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112149543
09142 Cell motility
04810 Regulation of actin cytoskeleton
112149543
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112149543
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112149543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
PH_11
PH_6
Motif
Other DBs
NCBI-GeneID:
112149543
NCBI-ProteinID:
XP_024133070
Ensembl:
ENSOMEG00000002061
LinkDB
All DBs
Position
LG13:complement(8528991..8587670)
Genome browser
AA seq
1589 aa
AA seq
DB search
MGNVESQNGYHGFYSSGRGYLSRKHMSRSLRISNKQPRRSRHASSGKIEHRNSETSTRSS
STPSIPQSLAENGLEPFNETDILPSFGSPIWVDRVAMSLRPLSFHNDLANPSVHMNTMHI
TLPGPTAEEEQDEDEYAADVKYLQKTCSKETVSFKKRSKSADMWRDDSLEFSLSDASQDH
LTSTEEIIDMTNEGDLTDCEGHLQPTDSTDRANSLDELYTNTGPTRRHPHGRYAKWQDAN
RSVRESDDDKMLSPSEEDGSSYGAYTLPCRRSHCLSEGLSTHEATTCASMQGRRAKTIQD
VTGGDGSEFEDSGIDGVMVEAEHQSRRYKTMSASFSVCSMHGRNMFAGSDSGSSGGGGAT
ERSQGVYENFRQELEMSSCQTESMEEASSALSDEQSTMTSAYQSDLLLSVIQGMVRKAGK
LAVKNFLVHKKNKKVESATRRKWKSYWVSLKGCTLFFYETDGRSGIDNNSIPKHAIWVEN
SIVQAVPEHPKKDFVFCLSNSLGDAFLFQTSSQTELENWITAIHSACAAAIARQHHREDT
VRLLRSEIKKLEQKIDMDEKMKKMGEMQLSAVTDTKKRKTILEQIFLWEQNLEQFHMDLF
RFKCYLASLQGGELPNPKRLLAFASRPTKLAMGRLGIFSVSSFHALVAARTETGVRRRTQ
AMSRSCSKRRSRFSSLWGLDTTSKKKTKAHPSVSQVFADGEEFEKKPPECTYLDHVKENT
KSEEETVKNLPHPNNESDIWVPDHLTPSWVCLPNDHPVLTIVQPGESALWVLESICKAHD
LDPTKHYLRLKFLIENQVQFYIPKPEEDICDLLYKEIELCSKITKVIQFDRDESCMIGYG
FSISVVEEDGVQQLYITDVKAGGLAFAKGLNAGDEILQLNGKDSHSLNFSDMKAAFSQAS
LALTVNTLPSVDRRQLCYLPPRRSDASEDLYTDIFSQSQEEILDDRVGLLLEGSGDSLDD
DDESFSDFDECRKSTEQVAAFCRSLHDMNPLDCVSSSPSPDSPFPPTATLRQLSDADKLR
KVICELVETERTYVKDLNCLIGRYLTPLQKETFLTQDELDVLFGNLPEMVEFQVEFLKTL
EDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLVKAKSD
ANFKAFLDERNPKQQHSSTLESYLIKPIQRVLKYPLLLRELYSLTDPDSEEHYHLDVAMK
AMNKVASHINEMQKIHEEFGSVFDQLITEQSGEKKEVADLSMGDLLLHSTVTWINPPVSL
GKWKKEPQLTTFVFKTAVVFICKDGSKQKKKMGGSHRLSVSSEDKDPFRFRHMIPTEALQ
VRSIGNTADGESSAVCEIVHTKSESEGRPERIFQLCCSSPESRKDFLKTVHSILREKHRR
QLLKTESLPLSQQYVPFGGKRLCALKGARPAINRAASAPTRTLGRRKLVRNRFTIDTDIV
FDGDPDQNDLTSPPESNSRKLQQKTESSDEQQQQSEEGDTDRWVEEQFDLEEYEDQEDMK
ETDILSDEDEEFCQAPKAQSEDLEAPMKALSLEGAEEVESESLKSPSLSDTHDDDEKLSD
MEEGDATDDTEDQKDEVWVRREPSGSSQD
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacgttgagagccaaaacggctaccatggcttctacagcagcggacgtggctat
ttgtcacgtaagcacatgtccagatcccttcgcatctccaataaacagcctagacgctct
cgccacgcgtcatcgggaaagatagagcacaggaactccgagaccagcacacgctcaagc
agcacccccagcatccctcagtccctggctgaaaatggcctggaaccctttaatgagact
gacatccttccaagttttgggagtccgatttgggtggaccgtgtggccatgagccttagg
cctctgtcctttcacaatgatctggctaacccttcagtgcacatgaacacaatgcatata
actctacccggtcccacggcagaggaggaacaggatgaagatgagtacgcagctgacgtg
aagtacctgcagaagacctgctccaaagagaccgtcagttttaaaaagaggtccaaatca
gcagacatgtggcgggacgacagtctggagttctccctgtctgatgccagccaggatcac
ttgactagcaccgaggagatcatcgacatgaccaacgagggagacttgactgactgtgaa
ggccacctccagcctacagactccacagacagggcaaactctctggacgagctgtatacc
aacaccggccccactcggaggcacccccacggccgctacgccaagtggcaagacgctaac
aggtcggtgagagagagcgacgacgataagatgctgtccccatcagaagaggacgggagc
tcctacggtgcctacacgcttccctgccggcgttcccattgtctgtctgagggcctgagc
acccacgaagccacaacttgtgccagtatgcagggcaggagagcaaagaccatacaggat
gtcacaggtggagacggcagcgagtttgaggacagtggaatcgacggggtgatggtggag
gcagagcatcagtccaggcgctacaagaccatgtcggcctccttttccgtgtgctccatg
cacggcaggaacatgttcgctggcagtgacagcggcagcagcggcggcggcggcgccacc
gagcgctcacagggcgtgtatgagaacttccgccaggagctggaaatgagctcctgccag
acggagagcatggaggaagcaagctccgccctgagcgacgagcagagcacgatgacctcc
gcctaccaatcggatctgttgctcagtgtcatccagggaatggttcggaaggccggaaaa
ctggcggtcaagaatttcctcgtgcataagaagaacaagaaagtggaatcagccacaaga
cgcaagtggaaaagttactgggtttccctgaaaggatgcacccttttcttctacgagact
gacggccgctccgggatcgacaacaacagtattcccaagcatgccatatgggtggagaac
agcattgtccaggccgtgccagagcatcccaaaaaagactttgtgttctgtctcagcaac
tctttgggagatgcgtttctattccagaccagcagccaaacggagctagaaaactggatc
acagccatccactcagcatgcgccgctgccatcgcccgccagcaccacagagaggacacc
gttcggctgctgcgatctgagatcaagaagctggagcagaagatcgacatggacgagaag
atgaagaagatgggggaaatgcagctgtcagccgtcaccgacaccaagaagaggaagacc
atcctcgaacagatcttcttgtgggagcagaacctggagcagtttcacatggatctgttt
cgctttaagtgctacctggccagtttgcaaggaggagaacttcccaaccccaaacgcctc
ctggccttcgcctctcgccccaccaagctagcgatgggccggctggggatattctcagtc
tcctccttccacgcattggttgcagctcgcactgaaactggagtccgacggcgaacacag
gccatgtcgcgctcctgcagcaaacgccggagcaggttctcctccctttggggcctggac
acgacctcaaagaagaagacaaaagctcacccttcagtcagccaggtctttgctgatggg
gaagagtttgagaaaaagcccccagagtgcacgtatctggatcatgtcaaggaaaacaca
aaaagcgaggaagaaactgtaaagaatcttccacaccccaacaatgaaagcgatatctgg
gtcccggaccacctgactccctcctgggtctgcctgccaaacgatcacccagttctaacc
atagtccagccgggagagtcggcgctctgggttcttgagtccatctgcaaggctcatgat
ctggacccaaccaaacattacctgagattgaaatttctcattgaaaaccaagtgcagttc
tatattcccaaaccagaggaggacatctgtgatctgctttacaaagaaatcgagctgtgc
tccaaaataacaaaagtcatccagtttgacagagatgaatcctgtatgattggttatggt
ttctccatctcggtggtggaggaggacggtgtgcagcagctctatataaccgatgtcaaa
gcgggaggactcgcttttgcaaaaggcttgaacgcaggcgacgaaatccttcagctgaat
ggaaaagattctcacagtctcaacttctccgacatgaaggcggcgttctctcaagcttca
ctggctttgacggtcaacactttgccttctgtggaccgccgtcagctctgctacctgccg
ccacgccgctcagacgcatcagaagacctctacactgacatcttctcccaaagtcaagag
gagatcctggacgacagagtgggactgctgcttgaaggctcaggagacagcttggatgat
gacgacgagagcttcagtgactttgatgagtgcagaaagagtacggagcaggtcgctgcc
ttctgtcgcagcctccatgatatgaatcccctggattgtgtgtcctcgtcgcccagcccg
gactcaccttttccacccacggctactctccggcagctgtcggacgccgacaagctccgc
aaagtcatctgtgaactcgtggagacggagcgcacatacgtcaaagatctcaattgcctc
attggaagatatttaaccccactgcagaaagagacttttctcacccaggatgagctggat
gttctgtttgggaatttgccagaaatggtggagttccaggttgagttcctcaagactctg
gaagatggaaccagactggttccagatctggagaagctggaaagagtggatcaatttaag
aaaatactcttttccttgggaggctctttcctttactatgcagaccgctttaagatctac
agtgctttctgtgccagccacaccaaggtgccaaaggttcttgtgaaggcaaaaagtgac
gccaactttaaggctttccttgatgagcggaacccgaagcagcagcactcctccaccctc
gaatcctacctaatcaaacccatacagagggtgctgaagtaccccctcctgctgagggag
ctctactcactcacagacccagacagtgaagaacactaccatctggatgttgctatgaaa
gccatgaacaaggtcgccagtcacatcaacgagatgcagaagatccacgaagagtttggg
tcggtgtttgaccagctcatcaccgagcagagcggcgagaaaaaagaggttgctgatctg
tcgatgggcgacctgctgctccacagcaccgtgacctggatcaacccacctgtatcctta
ggaaaatggaagaaagaaccacagctgaccacgtttgtgttcaaaactgcagtggtcttc
atatgcaaagatggatctaaacagaagaagaaaatgggtggctcccatcggttatcagtg
tcctcagaggacaaagatcccttccggtttcgtcacatgatcccaacagaggctctccaa
gtcagatcaataggaaacacagcagatggcgagagttccgctgtgtgtgagatcgttcac
acaaaatcagaatcggagggaaggccagaaaggatatttcagctgtgctgtagctctcca
gagagcagaaaggactttctgaagacggtgcattccatcttgagggagaagcatcgccga
cagctcctaaaaacagagagcttacctctcagccagcagtatgtgccatttggagggaag
cggctgtgtgccctgaagggagcccgtccagccataaatagagccgcatctgcccctacc
aggacactgggcagacggaagttggtccgcaatcgcttcaccatagacaccgacatcgtc
ttcgacggggaccccgaccagaatgacctcacgtcaccaccagaatctaactctagaaag
ctgcagcagaaaaccgaatcatcagacgagcagcagcagcagtctgaggagggggacaca
gaccgctgggtggaggagcagttcgacctggaggagtacgaagaccaggaggacatgaaa
gagaccgacatcctgagcgacgaggacgaagagttttgccaggctcccaaagctcagtct
gaagatctggaagccccaatgaaagctctgtccttggaaggggctgaagaagtggagagc
gagagcttgaagtcgccgtctctcagcgacacgcacgatgatgatgagaagctgtctgac
atggaggaaggtgacgctactgatgacacggaggatcagaaggatgaggtttgggtaaga
cgggagccatcaggctcatctcaagactga
DBGET
integrated database retrieval system
