Oryzias melastigma (Indian medaka): 112151452
Help
Entry
112151452 CDS
T07439
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112151452 (smchd1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112151452 (smchd1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112151452 (smchd1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112151452 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112151452
NCBI-ProteinID:
XP_024136174
Ensembl:
ENSOMEG00000002848
LinkDB
All DBs
Position
LG20:complement(6280322..6307147)
Genome browser
AA seq
1965 aa
AA seq
DB search
MHRLPAGAAAAAALLKGGRPNKRIRVYDCRHQDLPNKVLETRGSDFHGFLQVLRTCFGID
PHESFVLATPGKTVVDYALFDELQDECTLYLWQHKDQTLPTSTEKNIMFTPHYDTLIKSG
THEYYAENQKALPYALAELVDNSLSATAKNKGLRTIEIRLVFEKTLGKNGVLVLDNGCGM
TSTQLNNWAVYRLSKFSRQNSKFSSEKEGYVRPDDVPRSLNSDISYFGVGGKQAAFFIGD
SVRMISKPWDSPYVHELALSKEDFQRKEENNEDVYTGRIVSRMPCDPSQITDDERFLHDV
VREESGKQSFTVVVITGILTDHINYLKQDFETWTRELAHIYHYYIHGSNGNVLSQPSCPS
RDLTQKIDILVTLREKPPKSPILLNLRYVNNDMQTLYINAAADSFEFQATTAGDGGKVEG
VLRYHPFLYDRETYPKNPCASQASDNGDSDDNESDAGARGKKDIFECFWNGRLIPYTTVS
EFDWCSRPKKGSALPAECFSRLSGVLFTNDKFSVSTNKLKFMELELKLRNKETIFTPILK
DQQKFSKRGNIEKEFMQWLQSCHERYDKQVRFFGFRRTITRTDVPGKQNSPWGEFSAIEW
DGKIYQTGQLVKSQRKTPTLYGTIVRFLLHGEYDGDVFATGGEVEVTREPSALYNDTKIM
PISKIDRTATDEVILKGIEKDNDKLPDKLRLEWKEEILNPQIPAGSSIGPLLVEILNRKG
DVISHISAGQGPGTWLSVGLKVIRHDPKEEKTILTLTAPFLKSSKGHWFKKNGPLNDLGK
YSLVLNTIVGEQDSTCLGNRILPSHTFHFTITAAKEDHFTLSQLSPAYRVGNPFDIVLQI
KDHFGHPTALSSDTQPVLQCSGLDVSYETVSKSDTKVTIKGVVVRGKIQMHQQEKSYDLH
VTLPGLKKSKETAHIGLLPGAPHSVHVKEESAEVENGSPVMFNVEIHDEAGNLTANPKQL
VRCQVEGFKPVVIDCCKTGAGQVVTKPVQLNITDGEPQTLQVKFELLSQKNVAPVVIGLK
VVPSTRVARIEVYSQSEDLVLRNKEKISWPAGGLLENLCYRLFNERGVEVPLTADITSKI
KVNWTGDANSEDLVLGKLPEIQVPTQLQGERFCQVSYQEQNVSFCFTVTPCANEPSRLKA
TLPQNTLKLGQVLAEHIYLNLVDQFDNVTKRLPQDSMKDMTVEADGLDTSKISFAWQQSS
NSVALKGIRFHSGPLGPRELCFHYKSFEERVIIKVTAGEPAELKLISGPEQPLQVLKGHG
IPTPFLLQLCDEWGNPSPDQRVVVEVRSSRQSLKLTMPVISQPVNAEGKAQFSVLAVNGS
KGYYQLNFKGSFNEKPIRGPSVFLTVIPDPNKPVRLSVEYDKTAKLLAGGTFPVFSVTVV
SDEGSPITDINPADFSMLLWKGESSTPPETTPVMKCSKPMENEKNDCYYFRDKSIPVQIG
PHTIQFTLRNDKTKVPLLTQIKINVVPNQPFKLAPTSIPKIPVVSYSMEMPSRTLVENMT
LVIMDKFGNPAGQNLKGRVTVSISCPDQERRRNLPLFEGKTQSVHFNLEKGEAHINRLAI
MEKSPGENGSIYVLTFHPDVSTPLDPFQLNFHFYNDVENQQKMAELTKKKENLTVAINQF
AQRNESLRKLGTLLAQQFQNADYKVGTLRNEMNQRGLNIPPSLPVSRVEQMIHEKMAEAA
QFERAPRRVCSIPNNFSGPDVVGVVGHLALIEDDDAARVISWHLGGDMDCVITRTTEAAK
RIYDDTQGNQQVLPLDSIRKNALGRTLPHIKNGRSLFDPDGNPVFARHLLICPKETEICT
TVFRNLLDDTIVMDDLNSATNYRREVMKIQTYCSTILTRDGNRVSARGKFGGSQNKAPPI
GRLRVFASPLPQRYYVLKEETEKLREYHVAVTKKEKAEEDQRNHYKSLESPEMKQKQEQL
NQMKLQLQEIEMQLASVRPEKRRSRPSAEPSNFSKRQRGDSFFST
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgtctcccggcgggggctgcagctgccgctgccctcctcaaagggggtagaccc
aacaagcggatccgtgtttacgactgccgccaccaggacctgccgaataaagttctagaa
accaggggttcggattttcatgggtttcttcaggtcctccgcacgtgttttggtattgac
ccacatgagtcttttgtgttggccacaccgggcaagacagttgtggattatgcacttttt
gatgagcttcaggatgagtgcaccctgtacttgtggcagcataaagatcagactctgccg
acttcgacggagaaaaacattatgttcacgcctcattatgacaccctgatcaagagtggg
actcatgagtactacgccgaaaaccagaaagctctgccttacgctcttgctgagctggtg
gacaattccctttcagccacagctaaaaacaaagggttgaggaccatagagatacgactg
gtatttgaaaaaactcttggaaaaaatggagttcttgttttggataatgggtgtggcatg
acatcaactcaactcaacaattgggccgtctacagactctccaagttttcaaggcaaaat
agcaaattttcaagtgagaaagaaggatatgtgcgccccgatgacgtcccccgcagtcta
aacagtgatatatcttactttggagttggaggaaagcaggcagcattcttcattggggat
tcagtcaggatgatcagcaaaccgtgggactctccatatgtgcatgaattggctttatcc
aaagaggattttcaacgaaaggaggagaacaacgaggatgtttacacggggaggattgta
agcagaatgccatgtgacccctcccaaataacagacgatgagcgctttctccatgatgtt
gttcgggaggagtctgggaaacagagcttcactgttgtcgttatcacaggaatcctgaca
gaccacataaactatctgaagcaagactttgaaacgtggaccagagagctagcgcacatt
tatcactactacatacacggctccaatggaaatgtcttgagtcaaccaagctgtccaagc
agagatcttacccagaaaatcgacattttggtcacgttgcgggaaaagcctccaaaaagt
cccattttgctgaatctcagatacgtgaacaatgacatgcagactctgtacatcaacgcc
gctgctgactccttcgagttccaggccaccactgcaggggatggcggtaaagtggagggc
gtccttcgctatcatccgttcctctacgacagggagacgtaccccaaaaatccgtgtgct
tctcaagcctccgataacggtgacagcgatgacaatgaaagtgatgctggagcaagaggg
aagaaggacatctttgagtgtttctggaacggacggctcatcccgtacaccaccgtgtct
gagtttgactggtgctctcgaccaaagaaaggttcggctctgcccgccgagtgtttcagt
cgcctttcgggggttctcttcaccaacgacaaattttccgtcagcacaaacaaactcaag
tttatggagttggagctgaaactgaggaacaaggaaaccatcttcacccccattttaaaa
gaccagcaaaagttttcaaaaagagggaacatagagaaggagttcatgcagtggcttcaa
agctgccatgaaaggtacgacaagcaggtgaggttttttggctttaggaggaccataaca
cgaaccgatgtgcccggaaaacaaaacagtccctggggagagttctctgccatcgagtgg
gatggaaaaatctaccaaactggccaacttgtgaagtctcagagaaaaacccctaccctg
tatggcactatagttcgattcctgctccatggggagtatgatggagacgtctttgccact
gggggagaggtggaggtcactcgggagccttctgctctctacaatgacaccaaaatcatg
cccatttccaaaattgaccgaaccgccactgatgaagtcatactaaagggaatcgagaaa
gataatgataagcttccagataagcttaggttggagtggaaggaggaaatcctcaaccct
cagattcctgctgggtcttcaattggacctcttttggtggagattctaaacaggaagggg
gacgtgatatctcacataagcgccggtcagggaccagggacgtggctgagtgtcggcctc
aaagtgatccgacacgatcccaaagaagaaaagaccatacttactttaactgcaccattt
ttgaagtcttcaaaaggacactggttcaaaaaaaatggaccattaaacgatctgggcaag
tactctttggttctgaacaccatcgtaggtgaacaggactccacttgtcttggaaacagg
attcttccaagccacactttccactttaccatcacagcggccaaagaagaccacttcact
ctcagccagctgagcccagcctatcgtgtgggaaatccctttgatattgttctgcagata
aaggaccactttggtcaccctacggctctgtcttccgacacccagccagtcctacaatgc
agtggccttgacgtcagttatgagacggtgagcaaaagtgacaccaaggtcaccatcaaa
ggggtcgtagtcagaggaaagatccagatgcaccagcaggagaagagttatgacctgcat
gtgaccctgccaggtctaaaaaaatccaaagagactgcacacattggccttcttccaggc
gctccacattctgtgcacgtgaaggaagagtcagcagaagtggagaacgggagccccgtc
atgtttaatgttgaaattcacgacgaggccggaaacctcacagccaatccaaagcagctg
gtccgctgtcaggttgaggggtttaaaccggtcgtgatcgactgctgcaaaacaggagct
ggccaagtcgtcacgaagcccgtccagctgaacataacggacggagagccgcagacgctt
caagtcaaatttgagcttctttcacagaagaacgtagcacccgtcgtgatcgggttgaaa
gtcgtacccagcacccgagtcgcacggatagaagtctactctcagagtgaggatctggtt
ctgcggaacaaggagaaaatcagctggccagcaggaggattgttggagaacttgtgctac
aggttgtttaatgagcgcggcgttgaggtgccgctcaccgccgacatcacctccaagatc
aaggttaactggacaggagatgcaaacagtgaggatttggttctggggaagctgcctgaa
atccaggtgcccactcagctgcagggggagcgtttctgccaggtctcctaccaggagcag
aacgtgtctttctgcttcaccgtcaccccttgtgcaaatgaaccatcgcggctgaaagca
actcttcctcaaaacacgctgaaactcggtcaagtcctggcagaacacatctacttgaat
cttgtggaccagtttgataatgtaaccaagaggctcccccaggactctatgaaggacatg
actgtggaggctgacgggctggacacttccaaaatctcatttgcatggcagcaaagcagc
aactctgtggcgctgaaaggcattcgcttccactcgggccctctgggacccagagagctc
tgcttccactacaaaagcttcgaggagcgggtcatcatcaaagtgacggctggagagcct
gcagagctgaaactcatcagcggaccagagcagccgttgcaggtgttgaaaggccacggc
atccccacgccattcctcctgcagttgtgtgacgagtggggaaacccttccccggatcag
agggtcgtggtagaagtgcggtcttcaagacaatcactaaagttgacaatgcccgtcata
tcccagcccgtgaatgcagaagggaaagcccaattctctgttttggctgtgaacggatca
aaggggtactatcagttgaattttaaaggttccttcaatgaaaaacccatcagaggtccc
tcagttttcctcactgttattcccgatcctaacaaacctgtcagattgtcagtggagtac
gacaagaccgccaagctcctggcaggaggcaccttccccgttttttcagtgactgtggtc
tccgacgagggaagtccaataacggacatcaacccagcggatttttccatgctgctgtgg
aaaggagagtcatccactcctccagaaacgacccctgtgatgaagtgcagcaaaccaatg
gaaaatgagaagaatgattgttattatttcagagataaatcaattccagtgcagatcgga
ccacacaccatccagttcaccctacgaaacgacaaaaccaaagtcccgcttctgactcag
atcaagataaatgttgtccccaatcagcctttcaaactggcccccacctccatccccaaa
atcccggttgtttcctacagcatggagatgcccagcagaactttggtggagaacatgact
ctggtgattatggataaatttggaaaccctgcaggacagaacctaaaggggagggtgacc
gtctctataagctgtcccgatcaggagaggaggagaaatcttcctttatttgaggggaaa
acccagagcgttcactttaatttagaaaaaggagaagcccacatcaataggttggccatc
atggagaagagtcctggtgagaacggcagcatctacgtcctgaccttccatcctgacgtt
tccacacctctggatccttttcagctcaacttccatttctacaacgatgtggagaaccaa
caaaaaatggcagaactgaccaaaaagaaagagaacctcactgtagctattaatcagttt
gctcaaagaaatgagtcacttcgcaaacttgggactttattggcacagcaattccaaaat
gcagactataaagtgggcaccctcagaaatgagatgaatcaacgtggcctgaatatccct
ccctctctacctgtttcacgtgttgagcagatgattcatgagaaaatggctgaggctgca
cagtttgagagagcaccaaggagagtttgctccatccccaacaacttcagtggaccagat
gttgtgggagtggtcggacatttggcgctaattgaggatgatgatgctgcgagggtcatc
tcctggcatctcggaggagacatggactgcgtcatcaccaggacaacagaagcagccaaa
aggatctacgacgacactcaaggcaaccagcaggtcctgcccctggacagcattcggaaa
aatgcacttggacggacgctgccacacataaaaaacggccgctcgctctttgatccagac
gggaatccggtttttgcccggcacttgctgatttgccccaaggaaacggagatctgtacc
accgtgtttcgaaaccttcttgatgacaccattgtgatggacgacttgaactctgccacc
aactacaggagggaggtgatgaagatccagacgtattgctccaccatactaaccagggac
gggaatcgggtcagcgccaggggcaagtttggaggctcccagaacaaagcgcctccgatt
ggaagactgcgcgtgttcgcatcgcctctccctcaacgctactacgttctgaaagaggaa
acagagaagttgcgcgagtaccatgttgctgtaacaaagaaggaaaaagccgaagaagat
caaaggaatcactataagtctttggaatcgccagaaatgaagcagaagcaagaacaactc
aaccaaatgaagctgcagcttcaggagattgaaatgcagcttgcatcagtgaggccagag
aagcggcgttccagaccttcagctgaaccttccaatttttccaaaagacaaagaggagat
tccttcttttccacataa
DBGET
integrated database retrieval system
