Oryzias melastigma (Indian medaka): 112151959
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Entry
112151959 CDS
T07439
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112151959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112151959
Enzymes [BR:
oml01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
112151959
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112151959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
AT_hook
Motif
Other DBs
NCBI-GeneID:
112151959
NCBI-ProteinID:
XP_024136884
Ensembl:
ENSOMEG00000003695
LinkDB
All DBs
Position
LG6:complement(4123886..4133715)
Genome browser
AA seq
499 aa
AA seq
DB search
MYDSYQYDQHQLEEQSGDPYRSMDFYSENPTEESVMRQQPVHCGPSLHQEPRYSIYPPPS
NHNQVQPCQQSFREHQYQHQASAPNPQQRPASEFQHHYPPSALHHPQQHQQTSSEFYPQP
QQNPSALYHPYHQQQPNAELHSQQHQHHPSAVYHPYHQSQQQTHAEQHSQHHPSALSYPH
YQMQEQPPSQLPPQHQYTVQQGGPSIHFKTEPSDVPPPVTPVKKKRGRPSKQQTEEETPE
AENEIEAAKKAKRTLNRFNGMSVEEVMAKTLPDVITYDLDILIIGINPGLLSAFKGHHYP
NPGNHFWKCLFLSGLTEQQLNYMHDQSLPEKYSIGFTNMVERTTPGSKDLSSKEIREGGR
QLLEKLQKYKPLIAAFNGKGIYEIFCKEIFGVKAKNLDFGLQPYKIPETQTVCFLMPSSS
PRCAQFPRAQDKVHFYIKLKDLRDQMKGLVPGGEVMETQYSFDLQLAKEDAKRLSIKEEQ
VDPEYESCAGLHSELGQSS
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacagttaccagtatgatcagcatcaacttgaggaacagagtggagatccatat
cgcagcatggacttttattctgaaaatccaactgaggagtctgtgatgagacagcagccc
gtccactgcggtccgtcacttcatcaagaaccacgctacagcatctatcctccaccctcc
aaccacaaccaggtgcagccctgccagcagagcttccgggagcatcagtaccaacatcag
gcttcagcgccgaacccccagcagcgaccggcatcagagtttcagcaccattatcctcct
tcagctttgcaccatcctcagcagcatcaacaaacctcatccgagttctaccctcagcca
cagcagaatccttcagccctgtatcacccgtaccatcagcagcagccgaacgccgagctc
cactcgcagcagcaccaacatcatccttcagccgtgtaccacccttaccatcaatcccag
cagcagactcacgctgagcagcactctcaacatcacccttcagctctgagttacccccac
tatcagatgcaggagcagcccccatcccagctgcccccccagcatcagtatacagtacag
cagggaggaccgagtattcacttcaagactgagccttctgatgtacctccacctgtgact
ccagtgaagaagaagagaggtcgaccttccaagcagcagacggaggaagaaactcctgaa
gcggagaatgaaatcgaagccgccaaaaaagccaagaggactctgaaccgctttaacggc
atgtcagtggaagaagtcatggccaaaactctgcccgacgtcatcacctatgatttggat
attttgataattggtattaatccaggactgttgtcagcattcaaaggacaccattaccca
aacccgggaaatcatttctggaaatgtctgtttctgtctggtctgactgaacagcagctc
aactacatgcacgatcagagcctgccggagaagtacagcatcggcttcaccaacatggtc
gagaggaccacaccgggaagcaaggacctctccagtaaggagattcgtgaaggaggtcga
cagttacttgaaaagctgcaaaaatacaaaccattaatagcagcttttaatggcaaaggc
atttatgaaatcttttgcaaagaaatctttggtgtgaaagccaaaaatctggactttggg
ctgcagccctacaagatcccagagactcaaacggtttgctttttaatgccgtcatcgagc
ccccgctgtgcacagtttccacgtgcacaagataaggtgcatttttacatcaagctgaag
gacctgcgggatcagatgaaaggcctggtccccggcggcgaggtgatggagacacagtac
tcctttgacctgcagctcgctaaagaggatgcaaagaggctctcaattaaagaagaacaa
gtggatccagagtatgaaagctgtgctgggctgcactcagaactgggacaaagcagctga
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