KEGG   Oryzias melastigma (Indian medaka): 112152128
Entry
112152128         CDS       T07439                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X6
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    112152128
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:oml03000]
    112152128
   04121 Ubiquitin system [BR:oml04121]
    112152128
   03036 Chromosome and associated proteins [BR:oml03036]
    112152128
Enzymes [BR:oml01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     112152128
Transcription factors [BR:oml03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    112152128
Ubiquitin system [BR:oml04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     112152128
Chromosome and associated proteins [BR:oml03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112152128
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     112152128
SSDB
Motif
Pfam: RRM_1 F-box-like F-box LRR_4 RRM_5 LRR_At5g56370
Other DBs
NCBI-GeneID: 112152128
NCBI-ProteinID: XP_024137213
Ensembl: ENSOMEG00000022665
LinkDB
Position
LG17:29683992..29697976
AA seq 771 aa
MDRSSSASSLMSSSNVTNKTDPRSLNSRVFIGNLNTLLVTKADVEAIFSKYGKIVGCSVH
KGYAFVQYSNERNARAAVAGEDGRMIVGQVLDVGMCSSDINLAGEPKPHRSKTTKRSAGD
MYSSSSSFDLDYDFQRDYYDRMYSYPSRVPAPPPPLSRAVIPSKRPRVSLSGGSSRRTKS
SFSSSSKSSQRTSSSRTMRADELQTIKRELTQIKSKVDDLLESLERMEKDHSKKSEAKSI
KTEPGEVTSPPHSSSKKDDGLKRERESQDMNDSDEEEEEEDEGDLLEEEEVKSQEREEEE
EEEEEEEEDVDSEENKERVHRHHRRRRRTDYEDDEDDDSEGQDFDPEDDEMDTVEDEDRD
EEGDEDRWDSDPEPPVLLVSDLNDELLNGSYLTVTLQQPHKTKKHSGSIVPKLEAALGLR
TSAGSQQSFIQRKAALSKPLRLRADSPAPRGPGRPRLRGLQRDKAVCSQWASSSEEEDAP
AQSTLSSSSLLSLPSFKDVGSEKGGEKEVWLSVFMYLSRAELLACMTVCKAWYKWTCDKR
LWNHIDVSRCSPLSNQALAGIVKRQPTSLDLSWTPMARRQLNCLLTRLPGLRELRLAGLP
WSCLSALVSPTLPQLRLLDLRWCDGIKDSQMKEIITPPGLESSRSRLRNIETLRLSGLDV
SESTLRLLQRHTPQLQRLDLAHCRDITDSCITMLAAAGSHSRHNLTELTLAGCNQLTDGC
LSSLKRLSSLVLLDLRGCQGVSRRACDVFISDLSHIALYCMMEEKLIQRLD
NT seq 2316 nt   +upstreamnt  +downstreamnt
atggatcgttcatcctcagcctccagcctgatgtccagcagcaatgtcaccaacaaaacc
gacccacgctccctcaactcgcgggtcttcatcggcaacctcaacacgctgctggtcacc
aaagcagacgtggaggccatcttctccaaatacggcaaaatcgtaggctgctctgtccac
aagggctacgccttcgttcagtactccaatgagaggaacgcccgggccgccgtcgccggg
gaggacgggaggatgattgtcggtcaagttctcgatgtggggatgtgctcctcagacatc
aacctggccggagaacccaaaccgcaccgatcaaaaaccaccaagcgctcagctggtgac
atgtacagtagcagttcatcttttgacctcgattatgactttcagagagattattatgac
agaatgtattcgtacccgtcccgcgtccccgcaccccctcctcctctgtcccgagctgtg
atcccgtccaaacgcccgcgggtcagcctgagtggaggaagcagccggcgaactaaaagc
agcttctcttcttcctccaaaagtagtcagaggacttcatcgtctagaacaatgcgagca
gatgagctgcagactatcaaacgcgagttaactcagattaaaagtaaagtagacgacctg
ctggagagcctggagcgtatggagaaggaccacagcaagaagtctgaagctaagagcata
aaaaccgagccaggagaggtgacttcacctccacactccagcagcaagaaggacgacggg
ctgaagagagagcgcgagagccaggacatgaacgactccgatgaagaggaggaggaggaa
gacgaaggagacctgctcgaagaagaagaggtaaaaagccaagaacgggaggaagaagaa
gaagaagaggaggaggaagaggaagatgttgacagtgaagaaaacaaagaacgagttcac
cgtcatcacaggaggcgacgaaggacggactatgaggacgacgaagacgatgacagtgaa
ggacaggactttgatccggaggacgacgagatggacaccgtggaagatgaagacagggac
gaggagggagatgaagaccgctgggattcagacccagagccgcctgtcctcctcgtgtct
gacctgaacgatgagctgctcaatggctcctacctgaccgtcaccctgcagcagccgcac
aagaccaagaagcattctggttccattgttccaaagctggaagcagctctgggtctgcga
acgtcggctggatcgcagcagagcttcatacagaggaaagctgctctgtcgaaaccgctg
cggctcagagcggatagccccgccccgagaggacccggcaggccccgtctacgtggtctc
caaagagacaaagccgtttgctctcagtgggcctcctcttcagaggaggaggacgccccg
gctcagtccaccctgtcctcctcctctctgctatctctgccatcattcaaagacgtcggc
agtgagaaaggaggcgagaaggaggtctggctgtctgtgttcatgtacctgagcagagct
gagctgctggcctgcatgaccgtctgcaaggcctggtacaaatggacttgtgacaaacgc
ctgtggaaccacatcgacgtgagtcgctgtagcccactcagtaaccaggccttggccggc
atagtcaaacgccagccgacttctttggatctctcttggacgcctatggccaggaggcag
ctgaattgcttgctcacccggttaccaggtctgcgagagctgaggctggcgggtctgccg
tggtcctgtctttcagctctggtatcacccactcttccccagctgagactgctggacctt
cgctggtgtgacgggatcaaagattctcaaatgaaagaaatcatcacgcctcccggtctg
gagtcgtcccggagcaggctgaggaacattgagacgctgcgactctctggcctggatgtc
agcgagtccacactcaggctgctgcagcgccacacgccccagctccaaaggctggacctg
gcccactgcagggacataacggactcctgcatcaccatgctggcagctgctggcagccat
agccgccataatctcaccgaactcacactggcaggttgtaaccagctgactgatggctgt
ctgtcttctctgaagcgactctcctctctcgtgctgctagacctccggggctgtcagggc
gtcagcaggcgtgcctgtgacgtcttcatctctgacctgtctcatattgccctttactgc
atgatggaagagaagctcattcagcgcctggactga

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