Oryzias melastigma (Indian medaka): 112153685
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Entry
112153685 CDS
T07439
Name
(RefSeq) protocadherin gamma-C5 isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112153685
Cell adhesion molecules [BR:
oml04515
]
Cadherins
Protocadherins
112153685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
112153685
NCBI-ProteinID:
XP_036069760
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Position
LG10:complement(13859708..14388905)
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AA seq
1068 aa
AA seq
DB search
MTVLYKEINSTPSRFQHSISQCARAEARRENARTRWLLDSDFYCLFFNNSTRNICFSVWV
LIQFTWILLLGINHFNRPGCTRGGQKRMGYREWRWQALWWHHFFLLWSTTDGQTRYSIPE
ELKQGSVVGNVAKDLGLGLSEIFERKLRVASEAGEQYFSVDAGRGELLVNDRIDREALCA
QSASCVLPLQIVTENPLQLHRIEVEIKDINDNYPVFLTEERFLKIAESTATGVRFPLDPA
EDLDVGSNSVKIYTLSKNECFSLKMKDLSGDRQVPELVLDKSLDREKQSVHHLLLIASDG
GNPVKTGTAKITVSVMDNNDNVPVFKMPFYNVTVPENGVVGSVLVRVEATDADEGVNGEI
EYVFAEHTPQSLQSVFKIDQEKGDISLLEPLDYEKGAMYEIRITARDKGVPQMEGHCRVQ
IMVMDLNDNVPEIVLTSKPNPVQEDSPKGTVVALINARDQDSGNNGKVRLKITNGSPFAL
KPSFSNNYALITNGALDREIFSEYKVEITATDSGSPPLSSIKMITVSITDVNDNPPVFTQ
KSYIVYLKENGVPGCILFSVSASDLDSGENAKISYSILDSKVQDVSVSSYVYMNSENGSI
YSMHSFDYEKLKVFEIHVQAKDQGSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLS
HQRMPRSAKAGHLVTKVTAVDADSGHNAWISYRLAEATDASLFSVNLYTGEVRTKRAVSE
QDDSSQRLILEIKDDGEPLQSATVTVSILLEDALHEPISELRLHKASEPSKKSGRITLYL
ILSLASVSVLSLLTFVILAVKCMRSSRSSGSCCCMRRQDSEDHKNPNRNLQIQLNTDGPI
KYVEVLGGDMMSQSQSFRSCMSPMSEYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFE
SQQQKPPNNDWRFTQGQRPGPSGPHMPYGTHIRWTPKSGTRATGGPEVAMGTGPWPQPPT
EAEQLQALMAAANEVSEATATLGPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTS
NPQQQQQATAQQATQQALPPPQASAQSEPPKAVQTPASKKKSTKKEKK
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgacagttttgtacaaagagatcaactccaccccctctcgcttccagcacagcatctct
cagtgcgctcgtgcggaggcgcggagagaaaatgcgcgcactcgatggcttttggattca
gatttttattgcttgtttttcaacaattccaccaggaatatttgtttctcggtatgggtt
ttaatccagttcacatggatccttttgttgggaatcaatcattttaacaggccgggctgc
acccggggaggacaaaagaggatggggtaccgcgaatggagatggcaggccctgtggtgg
catcatttcttccttttgtggagtacaacagacggacagactcggtacagcatcccagag
gaacttaagcaaggatcggtggtcggaaatgtagccaaagatctgggtttgggactgtcg
gagatttttgagcgtaaattacgcgtcgcgtccgaggctggtgagcagtatttcagcgtg
gatgcggggcgaggagagctgctggtgaacgacagaatagacagggaagctttgtgcgca
caaagcgcgagctgtgttttacctctgcaaattgtgaccgagaatccgttgcaactacac
agaatcgaggtggaaataaaagacattaatgataattatcccgtttttttaacggaagag
cgatttttaaagatagctgaatccaccgccacgggggtccgtttccctttagacccagcg
gaggatctggacgtcggcagcaattcagttaaaatatacacactaagtaaaaacgagtgt
tttagcctgaaaatgaaagatttgtcaggagaccgtcaggttcctgaactggttttagac
aaatccctcgatagagaaaaacaaagtgtccatcatttgctactgattgcttcagacgga
ggtaatcccgttaaaactggaaccgcaaaaattactgtaagcgtgatggacaacaatgat
aatgttcccgtgttcaaaatgcctttctataacgtgacggttcctgaaaatggcgtggtt
ggttccgtgctcgtcagagttgaagccacggacgcagatgagggtgttaacggcgagatt
gaatatgtgttcgctgaacacactccgcagtcgctgcagtctgtttttaaaatagatcaa
gaaaagggggacatttcattattggagcctttagattatgaaaagggcgcaatgtatgaa
atacggataactgccagagacaagggagttcctcagatggagggacactgtcgggttcag
attatggtgatggatcttaatgataatgtgccagaaatcgttttaacttcgaaaccaaat
ccagtgcaagaggattcaccgaaaggcacagttgtggctttaattaatgcaagagaccaa
gattctggtaataacggcaaagtaaggttaaaaatcactaacgggtctccttttgcactt
aagccttctttttctaataattatgctctcataacaaatggtgctttagacagagagata
ttttcagagtataaagtggagataacagcgacagattcaggctctcctccactttccagc
ataaaaatgatcacagtgagcatcactgacgtgaatgacaaccctcccgtttttacgcag
aaatcttatatcgtgtatttgaaggagaacggagttccgggttgtattctgttctcagta
tccgcgtctgatctggattcaggtgaaaacgcaaagatctcttactccatcctggactct
aaagttcaggacgtgtccgtgtcctcctatgtttacatgaactcagagaacggcagcatc
tacagcatgcactcgtttgactatgagaagctgaaggtgtttgagatccacgttcaggcc
aaggaccagggctctccttctctcagcagcaacgcaactgtccacgtctttatcctggac
caaaacgataacgcccccgctgtcatttacccctcatccgctgctctgggctccctgtct
catcagaggatgccccgctccgccaaagcgggtcacctggtcaccaaggtgacggcggtg
gacgcggactcgggccataacgcctggatctcctacagactggcggaggccacagacgcc
tctctgttcagcgtcaatctgtacacaggagaggtgaggactaaacgcgctgtgtccgag
caggacgactcctctcagaggctgatcctggagatcaaagacgacggagagccgctccaa
tccgccaccgtcaccgtgtccatcctgctggaggacgctctccatgagcccatctcagag
ctgcgactccacaaagcgtccgagcccagcaagaaaagcggcagaatcaccctttatctg
atcctgtctctggcctcggtgtccgtgctgtctctgctgacgtttgtcatcttagcggtg
aaatgcatgaggagcagcagaagcagcggcagctgctgctgcatgagacgccaagactct
gaggatcacaagaaccccaacagaaacctgcagattcagctcaacaccgatggacccatc
aagtacgtggaggtcctgggaggagacatgatgtctcagagtcagtccttcaggtcctgc
atgtctcccatgtcagagtacagtgatttcactctgattaaacccagcagcaccacagac
tttaaggaggtcatcagtgtgctggacgcctctttacctgacagcacctggacctttgag
agtcagcagcaaaagccccccaacaatgattggcgctttacccagggacagagaccagga
cccagtggtccccacatgccgtacggtacacacatacgatggacgccgaaaagtgggaca
agggcgactggaggacctgaggttgccatgggaactggaccttggccccagccccctact
gaagcagagcagcttcaagccttgatggcagccgctaacgaagtgagtgaggccacggcc
accctcggacccggcaccatgggcctcagcacccgctacagcccccagttcaccctgcag
cacgtgcccgactaccgccagaacgtctacatccctggcagcacggccaccctcacctca
aacccgcagcagcagcagcaggccacggcccagcaggccacccaacaggctctgcccccg
ccgcaggcctcggcccagtccgagccccccaaggccgtccagacccccgcctccaagaag
aagtccaccaagaaggagaagaagtaa
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