Oryzias melastigma (Indian medaka): 112154105
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Entry
112154105 CDS
T07439
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112154105 (scn4aa)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112154105 (scn4aa)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
112154105
NCBI-ProteinID:
XP_024140513
Ensembl:
ENSOMEG00000005333
LinkDB
All DBs
Position
LG19:16309977..16340276
Genome browser
AA seq
1867 aa
AA seq
DB search
MATLLPPQGTDFFRPFTRESLVEIERLEAESKKPVKVEEENEEAAPHPDLEAGKNLPMIC
GDPPPKLLNTPLEDLDPFYKAQKTFIVISKGNTIYRFNAEPACYILSPFSLIRRGSIKIL
IHPLFSMFIMITILSNCVMMTMSNPPPWSKTVEYVFTGIYTFEATIKVLSRGFCVGSFTF
LRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQSVK
KMGDVMVLTVFALAVFALVGLQLFMGNLRQKCVRWPILMNETASEFFNSSSTFNHTVDFS
NITASNNSVYYNSTFDFVEYIENIENHYYLDGSKDALLCGNSSDAGKCPDGFTCLKAGRN
PNYGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGRTYMLFFVAIIFLGSFYLINL
ILAVVAMAYEEQNQATQREAIEKEEEFQRLLEQLKNQEKANALGSRGTLTSRKSLSHCTK
SEDEQSLKHGETVKDCNGRVVPHLIIRAPTMTESAAEYEEKRKSLESVHTMLHVDQGLTQ
RSISATTVLTTMGELEEAQRPCPPCWYRFADMFLKWNCCVPWVVFKKWVHFVVMDPFVDL
AITICIVLNTLFMAMEHYPMTPEFDHMLSVGNLVFTGIFTAEMFFKLIALDPYYYFQVGW
NIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKSYKECVCKISSDCELPRWHMNDFFHSFLIVFRILCGEW
IETMWDCMEVAGTAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLAPGDEDGEMNNL
QIAIGRITRGVDWLKAFAIRKVLQMIGRKPKEPDTGGVDDVSSKTEAIEMNHFNTCEPLK
AAEKTPECVAESRLLEFILDGDLRLNVPIAEEESDFDNLSVEDDEDDEEDSDTSDVAEKR
NGQHNSINVGDETSITEKPQLKEALDDDASSVCSTVDYQPPEPEPEVIEEEEPEPEEPEA
CFTDKCVSRWPCLTVDVTEGKGKKWWNLRKTCFTIVEHDWFETFIIFMILLSSGALAFED
IHIERRRTIKIILEFADKVFTYVFVIEMLLKWVAYGFKTYFTNAWCWLDFFIVDISLVSL
VASWLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVMLVCLIFWL
IFSIMGVNLFAGKFYRCINTTTDEIFTLTEVNNHSECDALNEVTQEARWVNVKINFDNVG
KGYLSLLQVATFKGWMDIMYAAVDSREVEEQPSYEINLYMYMYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKKKFGDQDIFMTEDQKRYQEVMKKLGSKKPQKPIPRPTNFLQGMVFDLIS
QQFFDIFIMVLICLNMVTMMVETDDQSVEMEDFLLKLNIAFIVVFTGECLMKLFALRHYF
FTNGWNVFDFIVVILSIAGTMLSDLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTL
LFALMMSLPALFNIGLLLFLIMFIFSIFAMSNFAYVKKEAGIDDIFNFETFGGSIICLFQ
ITTSAGWDGLLLPMLNRDPPDCDPDFENPGTDVKGNCGNPGMGMMFFCSYITVSFLVVVN
MYIAIILENFNVAQEESGEPLCEEDFEMFNETWEKFDLDGTMFINYCQLSDFCDALQEPL
RVAKPNRLHLIEMDLPLVIGDRLHFVDVLMAVTQIVLGDTVEMAAMRESIQVKFAMSNPS
KDSFAPITTTVRHKEEHTAALVIQRAYRKHLLERCIHRAAVLHRLKRMGKQDEGEDPPEK
DGLLAKRFWILYGSSQELVEEAEQVGQYSPEPQKMVVPVEIVKDMLLHSAPNQNRQTSQL
NLRESDV
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctgctccctccccaaggtactgacttcttccggcccttcaccagagaatca
ctggtggagattgagaggctcgaagcggaaagtaaaaagccagtcaaagtagaggaggag
aatgaggaagcagccccacatcctgatctggaggctggcaaaaatctgcccatgatatgt
ggggatcctcccccgaagctcctcaacacgccactggaggatctggaccccttctataaa
gcacagaaaacattcattgtgatcagcaaaggaaataccatctacaggttcaacgctgaa
ccagcatgttacattctgagcccctttagcctgatccggagaggatccatcaaaattctc
atacatccattgtttagcatgttcattatgataaccattctatcaaactgtgtcatgatg
acgatgagtaacccaccgccatggagcaaaaccgttgagtatgtgtttaccggtatctat
acctttgaggcaacaatcaaagtgttgtccagaggtttctgtgttggatcttttacattc
ctacgagatccatggaattggctggatttcatggtgatcagcatggcttacatcactgag
tttgttgacctcggcaacgtatcggccctcagaacgtttcgagtgcttcgagccctgaaa
acaataactgtgatacctggtctgaagacgattgttgctgctttaatccagtcggtgaag
aaaatgggggacgtcatggtcctcaccgttttcgccctggcggtttttgctctcgttggc
cttcagctgttcatggggaacctgcgtcagaaatgtgtgcgatggcccatcctgatgaac
gaaaccgcatccgagtttttcaattcctcatcaacattcaaccacacagtggacttcagc
aacatcacggccagcaataacagtgtttactataacagcactttcgatttcgtggaatat
attgaaaatatagaaaatcactattatttggacggcagcaaagatgcacttctatgtggt
aacagctctgatgctggaaagtgtcctgatggattcacatgcttgaaggcaggcaggaac
cccaactatggctacacgagctttgactccttcggctgggccttccttgccctcttccga
ctcatgacccaggactactgggagaaccttttccagctgatcttgcgggcagctggcagg
acgtacatgctgttctttgtggcgattatctttctgggttccttctacctcatcaatctc
atcctggctgtggtcgccatggcttatgaagaacagaatcaagcaactcagagagaagcg
attgagaaagaggaagagtttcaacgtttgctggaacaactcaaaaaccaagaaaaagct
aatgctctcggaagtcgagggaccctgaccagcaggaagtcgctcagccactgcacaaaa
tctgaggatgaacagagtctcaaacatggagaaacagtcaaggactgcaatggcagagtt
gttccccacctgataatcagagctcccaccatgactgagtctgctgcagaatacgaagag
aagcggaagtctttagagtctgtgcacaccatgcttcacgtggatcaaggtctgacacag
agatccatcagtgccacaacagtgctgaccacaatgggagagttggaggaggctcagagg
ccttgcccaccttgctggtacagatttgcagacatgtttctgaagtggaactgctgtgtg
ccctgggttgtctttaaaaaatgggtacactttgtggtcatggacccctttgttgacctg
gcgattaccatctgcattgtcctcaacaccctcttcatggcgatggagcactatcctatg
accccagagtttgatcacatgctctctgtgggcaacctggttttcactggaattttcacc
gcagaaatgtttttcaagcttatcgctctggatccctattactactttcaagtcggctgg
aatatttttgacagcatcattgtcactctaagtctggtggaattgggactggcaaatgtg
cagggtctgtctgtgctcaggtcttttcgtttgcttcgagtctttaaactggcaaagtcc
tggccaacgctcaacatgctaatcaagatcattggtaactcagtcggggctttgggaaac
ctgactttggttctggccatcatcgtcttcatttttgctgttgtcggcatgcagctcttt
ggaaagagttacaaggaatgcgtgtgcaagatctcgtcggactgcgagctgccgcgttgg
cacatgaacgacttcttccactcattcctcatcgtgttccgcatcctgtgtggggagtgg
atcgagaccatgtgggactgtatggaagtggccgggacggcgatgtgtttaattgtcttc
atgatggtcatggtaatcggaaatctagtggtgttgaacctcttcttagccttgctgctg
agctcgttcagcggcgacaacctcgcaccgggggacgaagacggagagatgaacaacctg
cagatcgccatcggcaggatcacacggggcgttgattggctgaaggcatttgccatccga
aaagtcctgcagatgatcggcaggaagcctaaggaaccggacactggcggtgtggatgac
gtcagctcaaaaacggaagcgattgaaatgaaccatttcaacacctgtgagcctctaaaa
gctgcagaaaagacgccagaatgtgtggctgaaagccggctcctcgagttcattctggat
ggagatcttcgcctgaatgtgcctatcgctgaagaggaatcagattttgacaatctgagc
gtggaggatgacgaggatgatgaagaggattctgacacctcagatgttgcagaaaaaaga
aatggtcaacacaattcaataaacgtgggagatgaaaccagcatcacagaaaaacctcaa
ctaaaggaggctttagatgatgatgcttcctcagtatgtagtacagtagactatcaacca
cctgagcctgaaccagaggtaatagaggaggaagagccagaaccggaggaaccagaggcc
tgcttcaccgacaagtgtgtgagtaggtggccatgtttgactgtggatgtcaccgagggc
aaagggaagaaatggtggaacctccggaaaacttgctttacaatagtggaacatgattgg
tttgaaaccttcatcatctttatgatcctcctcagcagtggagctcttgcctttgaagat
atccacatagaaagacgccggaccatcaaaatcattctagagtttgctgacaaggtcttc
acttacgtctttgtcattgagatgctcctcaaatgggtcgcatacgggttcaagacctac
ttcaccaatgcttggtgttggctcgacttttttattgtagatatttctctggttagtttg
gtggcgagttggctgggatactctgaccttggaccaatcaagtctctcagaacgctgagg
gctctaaggcctctacgtgctctgtcgagatttgaagggatgagggtggtggtaaacgcc
ctcgttggagcaattccctccatcttcaatgtgatgctggtgtgtctcattttttggctc
atcttcagcatcatgggagttaatctttttgccgggaagttctaccgttgcatcaacacc
accacagatgagatttttaccctcaccgaggtcaacaaccacagtgagtgcgatgccctc
aatgaggtcacacaggaggctcgctgggtgaacgtcaaaatcaactttgacaatgttgga
aaaggttacctgtccctacttcaagtggcaactttcaagggttggatggacatcatgtat
gctgctgtggactcaagagaggttgaggaacaaccttcctatgagatcaacctctacatg
tacatgtattttgtcatcttcatcatctttggttctttcttcaccttaaacctcttcatt
ggcgtcattattgataactttaaccaacaaaagaaaaagtttggagaccaagacatcttc
atgaccgaagatcagaaacgataccaagaagttatgaaaaaacttggttccaagaagcca
cagaagccgattcctcggccaacaaacttcctccagggcatggtgttcgacctgatcagc
cagcagttctttgacatcttcatcatggtcctcatttgtctcaatatggtgaccatgatg
gtggagacagacgaccaaagtgtagaaatggaggatttcctcctgaaactaaacattgct
ttcatcgtcgtcttcaccggggagtgtttgatgaagctctttgctctccggcattacttc
ttcaccaatggctggaacgtctttgacttcatcgtggtcatcttatcaattgctgggaca
atgctttcagatttaattgagaagtactttgtgtcaccaactttattcagagtgatcaga
ctggccaggattggaaggattttgcggcttattaaaggagcgaagggtattcggacgctt
ctgtttgcactgatgatgtcacttcctgccctgttcaatattggtctcctcctcttcctc
atcatgttcatcttttccatctttgccatgtcgaactttgcttatgtaaaaaaggaggct
gggatcgatgacatatttaattttgaaacgtttggaggtagcatcatctgcttgtttcag
atcactacctcagccggatgggatggccttctacttccaatgttgaacagggatcctccc
gactgcgatccagactttgaaaatcctggcacggatgtaaaagggaactgtggcaacccg
ggcatgggtatgatgttcttctgtagctacattaccgtctccttcttagttgtggtcaac
atgtatatcgcaattatcttggagaattttaatgtagcacaagaggagagcggtgaaccg
ctatgcgaggaggactttgagatgttcaatgagacctgggagaagtttgacttggatgga
accatgttcatcaactactgccagctgtcagacttctgcgatgccctgcaggagcctctc
cgggttgccaaaccgaaccggctccacctgattgaaatggatcttcctttggttatcggc
gacaggcttcactttgtggatgttttgatggctgttactcagatagtattgggagacacg
gtggaaatggcagcgatgcgtgagagtattcaagttaaattcgccatgagcaacccgtca
aaagactcctttgcaccgatcaccacgaccgtgcgccacaaagaagagcacacggccgct
ttagtcattcagcgagcgtaccgcaagcatctcctggagcgttgcattcaccgtgctgct
gttttgcaccgtttaaagagaatgggcaaacaggatgaaggtgaagatccaccagaaaaa
gacggactgcttgcaaaacggttttggattctctatgggagcagtcaagagcttgtggag
gaagcggagcaagttggtcaatactcaccagagccgcaaaagatggtcgtccctgtggaa
atcgttaaagacatgttgctgcattctgcccccaaccagaatcgccaaacctcacagtta
aacctgagagaatcagatgtatag
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integrated database retrieval system
