KEGG   Oryzias melastigma (Indian medaka): 112154310
Entry
112154310         CDS       T07439                                 
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03440  Homologous recombination
oml03460  Fanconi anemia pathway
oml04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112154310
  09124 Replication and repair
   03440 Homologous recombination
    112154310
   03460 Fanconi anemia pathway
    112154310
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:oml01009]
    112154310
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oml04121]
    112154310
   03036 Chromosome and associated proteins [BR:oml03036]
    112154310
   03400 DNA repair and recombination proteins [BR:oml03400]
    112154310
Enzymes [BR:oml01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     112154310
Protein phosphatases and associated proteins [BR:oml01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     112154310
Ubiquitin system [BR:oml04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112154310
  Multi subunit type E3
   BRCC complex
    112154310
Chromosome and associated proteins [BR:oml03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     112154310
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     112154310
    BRCA1-A complex
     112154310
    BRCA1-B complex
     112154310
    BRCA1-C complex
     112154310
    BRCA complex
     112154310
   FA (Fanconi anemia) pathway
    Downstream FA components
     112154310
SSDB
Motif
Pfam: BRCT BRCT_2 zf-C3HC4 zf-C3HC4_2 zf-C3HC4_4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 RTT107_BRCT_5 RING_XB3-XBAT31 zf-Nse zf-RING_5 zf-MIZ zf-RING_4 zf-ANAPC11 zf-RING_6 TRAF3_RING PTCB-BRCT zf-RING_10 Sina_RING
Other DBs
NCBI-GeneID: 112154310
NCBI-ProteinID: XP_024140931
LinkDB
Position
LG19:complement(6034250..6055230)
AA seq 1165 aa
MKTPKSTDVRKGIADLWETLQCPICLDLMALPVSTQCDHKFCKFCMMKLLDTSKQNTANC
PVCKTKVTRRSLRESPSFQKLVTGLQDIIQAYERDTGTNYFTGLTCQKKPSSLSGESPGQ
NTDVENGGGDTSRSHSSTIAAQSDFAKLMGLEDSAPLATENECLDSGLGDAPPTNDRKLS
SPADSCEPAATVRKVALPHKTRRKKRPSNLEKASSDQESAQDEARKSSRKKKRNDLEPDQ
VLEEKKKKSLEKVAEWLLKVPVDEEKPPEKAEDSDSASSASTIDIKIHKSDLKREDRTKA
LEDQVFGAVYRRRATKSTSPLRKELEKDQQQNCLEAEMEKKSLDVNMEESLHKNEKEEGE
VPQTDEKTQRSSLQDLKKKINQAKSEEKVGRKGRLRKKQPTLALVGAHDGGTASPEQVQV
QIENYPSSEDQEIPIRRRSARTSKRLFKATKKPSDSLKSESVAKRNGCVYEQELSGIESM
ETAEKTSVLKPAEVPQLPLEADESVFPKSASPTAIDPTLGEETPKTGPLLETPVGEPQTE
NDSELDTEQLLRSFKSTKRKSFHLGPPNVKRNRSDEVHRENPDDLSQQQKPETEKSSCSD
LISPSISPIQMVSEKQDTDAFARKCTLRSSLSSNLSPNKVSKRDKESSPLSVVPQVGESG
LVFRAVQHEEMAAELDGSDASKVPETRDGSPESDLPGTTKHCILPEYSLTPDGLLDSGTI
VAASGDVSIRSHVNAKRKRAQKLESSSESNSSGAEEELPTLKEIIGTAAGNRREADGCEE
AVDPPEEAAEQCPSPDSQASVDLFGTPEECGVPVNETSETIESSQFSSEILVTQQKMEMQ
KELVRLEKLMALVSEVLQEKEENPAPKLPPDTRQSNEVTGPDSDASLQCDPVQGPGRMDF
PGGKDAKTVTSDEKVATDTAIQSHGDATETASRTVQKRPSPPDGQDDKENTSPPKAGAKG
KLVFVSSGLGPTEQMMVKKFAKRVGARVVSHVSPEVTHVIMRTDDELVCERTLKYFLGIA
GRKWVVSFQWISECFKQKKLLDESPFEVKGDVVNGPNHCGPLRGRTTEDDNLLLKGFKIC
IQGSFTDMATDEMEWMVELCGATVVKDPLLFDSKQPHQLVIVQPRSDASSSTYSNLSRKA
TVLTRGWLLDTVATYSVQNYKNYTI
NT seq 3498 nt   +upstreamnt  +downstreamnt
atgaaaacccccaaatccaccgatgtccggaaagggatcgctgacctttgggagactctg
cagtgccccatatgtttggatttaatggcgctgccagtatctacacagtgtgatcacaag
ttttgcaagttttgcatgatgaaacttttggacacttccaaacaaaacacggccaactgc
cctgtctgtaaaaccaaggttactagaaggagcttgagagaaagtcccagttttcagaaa
cttgtcacaggattgcaggacattatacaggcgtatgagcgcgacaccggaacaaactat
ttcactggtttgacctgccagaagaaaccctccagtttatctggagaaagtcctggtcaa
aacactgatgtggaaaatggaggcggagatacttcacgttctcattcttcaactattgca
gctcagagtgattttgcaaaactgatgggacttgaagactcggctcccttagcaacagag
aatgagtgtctggacagcggcctcggcgacgcgccaccgaccaacgacaggaaactgtcc
agccctgcagacagttgtgaaccagcagctactgtcaggaaggtcgcgttaccacacaaa
accaggaggaagaagagaccttccaacctggagaaagcttcctctgatcaagagtcagcc
caagatgaagcaagaaagtcttcaaggaaaaagaagagaaacgatctggaaccggatcaa
gttctggaggagaagaagaagaaaagcctggagaaggtcgcggagtggctcctgaaagta
cccgtagatgaagagaaacctccggaaaaagccgaggactccgacagcgcttcgtctgca
tcgacgatagatatcaaaatacacaagtctgatctgaagagagaagatcgcactaaagcc
ctggaagatcaggtgtttggagccgtctacagaagaagagcaaccaagtccacctcacct
ttgaggaaggagcttgaaaaagaccagcagcaaaactgtttagaagcagaaatggagaag
aagagtttagatgttaacatggaagaatccctgcacaaaaacgagaaagaggaaggtgaa
gttccccaaacggacgaaaagactcagagaagttctctgcaagacttgaaaaagaagata
aatcaagcaaaatcagaagagaaagtcgggaggaaaggaaggttaagaaaaaaacaacct
actcttgctttagttggagctcacgatggaggaaccgccagcccagaacaagtccaagta
cagatagaaaattacccgagcagcgaagatcaggaaatccctatcaggagaagaagcgca
aggacaagtaaaagactcttcaaagccaccaagaagccctccgactccctgaaaagtgag
agcgtggcaaaaagaaacggatgcgtctacgagcaagaactcagcggaattgaaagtatg
gaaactgcagagaaaacctccgtcctgaaaccggcagaagtaccgcaacttccgttggaa
gctgacgaatctgtgttcccgaagtctgcaagtccgactgcaatcgacccaactctcgga
gaggagacgccaaagaccggtcctctactggaaacgcctgtcggagaaccacagacggaa
aacgacagtgagctggacacggagcagctgctccgaagcttcaaatcgactaaaaggaaa
tccttccacctcggcccgccgaacgtgaagcggaatcgctcggacgaggtccaccgcgag
aatccggatgacctctctcagcagcagaaaccagaaacggaaaaatcctcctgcagtgat
ttgatttctccatcgatctcacccatccagatggtctctgaaaaacaggatacggatgct
tttgccagaaagtgcaccttaaggagtagtctgagcagtaacctcagtcccaataaagtg
tccaagcgggacaaggaaagctctcctctttctgttgtccctcaggttggagaatccgga
ctcgtcttcagagctgttcagcacgaggagatggcggctgagcttgatggtagcgatgct
agcaaagtgccggagacgagagacggaagtccagaaagtgatctacccggtactaccaaa
cactgcatccttccagagtactctctaacccccgacggcctgctggactctgggacgatt
gttgctgctagcggagacgttagcatccgttcccacgtgaatgctaaacggaaaagagct
caaaagctggagtcttcatcggaatccaacagcagcggagccgaagaggagctacccact
ttgaaggagattattggaactgcagctggaaaccggagagaagctgacggatgtgaggaa
gcggtggatcctcctgaggaggcggcagaacagtgtcccagccccgacagtcaagcatct
gtggatttattcgggacccccgaagaatgtggagttccagtaaatgaaaccagtgaaacc
attgagtcctcccagttttcaagtgaaatccttgtaactcagcaaaaaatggagatgcag
aaggagctggtcagactggagaagctgatggctctggtgtcggaggtgttgcaggagaaa
gaggagaaccccgccccaaaactcccaccagacacccgtcagagcaacgaagttacaggt
ccagattctgatgcttccctccagtgtgacccagtccaaggcccgggcaggatggatttt
ccaggtggaaaagatgccaaaactgtgacatccgatgaaaaggtggcgactgacaccgcc
atacagagtcacggggacgccacagagacggcctccaggacggtccagaaacgtccgtca
cctccagacggacaagatgacaaagagaacaccagccctccaaaagcaggagctaaagga
aagctggtgttcgtttcttctggtttgggccccactgagcagatgatggtgaaaaagttc
gccaagagggttggagcgcgtgtggtttcccatgtgagtccagaggtgactcatgtcatc
atgcgtacagatgatgagctggtctgtgagcgcaccctaaagtatttccttggaattgca
ggcaggaagtgggtcgtcagcttccagtggatttccgaatgtttcaaacaaaagaaactc
ctggatgagagtccttttgaagtgaaaggtgacgtcgtgaatggaccgaaccactgcgga
cctctgaggggtcgcaccactgaagacgataatctgctgctgaagggcttcaaaatctgc
atccaaggatcttttacagacatggcaacagatgaaatggagtggatggtagaactctgt
ggagctactgtagtcaaagacccgctgctttttgacagtaaacagccacatcaactcgtc
atcgtacagccgagatcagatgcatcgtcttcaacatacagcaatctctccagaaaagct
acggttctgacccgcgggtggctcttggacacggtcgcaacctactctgtgcagaactac
aaaaactacacaatataa

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