Oryzias melastigma (Indian medaka): 112155073
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Entry
112155073 CDS
T07439
Symbol
irf5
Name
(RefSeq) interferon regulatory factor 5
KO
K09446
interferon regulatory factor 5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112155073 (irf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112155073 (irf5)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112155073 (irf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
112155073
NCBI-ProteinID:
XP_024142248
Ensembl:
ENSOMEG00000020932
UniProt:
A0A3B3DW47
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Position
LG23:complement(22813356..22818905)
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AA seq
458 aa
AA seq
DB search
MSVQPRRVRLKPWLLAQVNSGRYPGLQWLSPDHRLFQIPWKHATRHTPVSDEENTIFKAW
AVETGKYQEGVDEPDPAKWKANLRCALNKSREFQLKYDGTKETPLQPYKIYEVCEHPGVT
DGAEEEEEEMPNLMELSINPPIGEPGFSDPPLLLDLPMTSDLQLQAQMVEQRSFVQPGGL
PNGLQDMNPLTSTQPEPGQMEASPMEAVQNQRDSQNQQTCKYDLLSSVPLTDLDLKFQYR
GRTVGSETVSNPQGCRLYYGHLEPTPDQVDLFGPVSLQQVRFPGTSEIQNQKQRFYTDAL
LDVMDRGLILEILNQDIYAIRLCQCKVFWSGPGLPEPGPPNPIEREKRIKVFSLNDFLQG
LILYQKGEAPNPPPFEVYFCFGEDWPDKKPKERKLIIVQVVPVVARILTEMFSGEMSWST
DSIRLQISNPDVKDQTVEQFKELQRLLQSQNIQGPWAP
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccagccccggagggtccggctgaagccgtggctcctggctcaggtgaacagc
ggcaggtatccgggcctgcagtggctcagtccggaccaccggctcttccagatcccgtgg
aaacacgccacccgccacacgccggtgtcggacgaggagaacaccatcttcaaggcgtgg
gccgtagagaccgggaagtaccaggagggcgtggacgagcccgacccggccaaatggaag
gccaacctgcgctgtgcgctgaacaagagccgcgagttccagctgaagtacgacggaacc
aaggagacgccgctgcagccgtacaagatctacgaggtctgcgagcatccaggtgtcaca
gacggggctgaggaggaggaggaggagatgccgaacctgatggagctcagcatcaacccc
cccatcggcgagccgggcttctctgacccccccctgctcctggacctccccatgacctct
gacctccagcttcaggctcagatggtggaacagaggagttttgttcagcctggaggactt
ccaaatggactccaggacatgaacccgctgacctccacccagccagaaccgggccagatg
gaggccagccccatggaggccgtgcagaaccagagagactctcagaaccagcagacctgc
aagtatgacctgctgagcagcgtcccactaacagacctggacctgaagttccagtaccga
gggagaacggtgggatctgaaaccgtcagcaacccccagggctgccggctgtactatgga
cacctggaacccaccccggatcaggtggacctgtttgggcccgtcagcctgcagcaggtc
cggttccctggaacttctgagatccagaaccagaagcagcgcttctacacagatgctctg
ctggacgtcatggatcgaggcctgatcctggagatcctgaaccaggacatttatgccatc
cgcctgtgccagtgtaaggtgttctggtctgggcccggcctgccagagccgggaccaccc
aaccccatagagagggaaaagaggatcaaagtcttcagtctgaacgacttccttcaaggt
ctgattctgtaccagaagggcgaagctccaaaccccccacccttcgaggtctacttctgc
tttggggaggactggccggacaaaaagcccaaagagaggaagctaatcatcgtccaggtg
gttccggtggtggcccggatcctgaccgagatgttctctggagaaatgagctggtccacg
gacagcatccggctgcagatctccaaccccgatgtgaaggaccagacggtggagcagttc
aaagagctgcagagactcctgcagagccagaacatccagggaccctgggccccctag
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