Oryzias melastigma (Indian medaka): 112156742
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Entry
112156742 CDS
T07439
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C isoform X1
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04010
MAPK signaling pathway
oml04020
Calcium signaling pathway
oml04260
Cardiac muscle contraction
oml04261
Adrenergic signaling in cardiomyocytes
oml04270
Vascular smooth muscle contraction
oml04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112156742 (cacna1c)
04020 Calcium signaling pathway
112156742 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
112156742 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
112156742 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
112156742 (cacna1c)
04270 Vascular smooth muscle contraction
112156742 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112156742 (cacna1c)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112156742 (cacna1c)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
112156742
NCBI-ProteinID:
XP_024144894
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Position
LG23:12546157..12736439
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AA seq
2318 aa
AA seq
DB search
MVNDSKNMYIPEDTLENHQGSDYSPPTLPRPPHPGLTNEHSGVGSHGDRSGGGGGANHGV
GVVGLAPEHIPTPGAALSWQAAIDAARQAKMMGNAASGGGAGLGSGGGGPISTASSTQRK
RQHYSAKPKKQTTTTATRPPRALLCLTLKNPIRRACISIVEWKPFEIIILMTIFANCVAL
AVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFI
IVVVGLFSAILEQATKGDGATPIGGKAAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSI
IKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCVHNHTGLNAEEKPAPCAPDGAYG
RHCTQNGTQCRVGWEGPNDGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAVDYRWPW
VYFVTLIIIGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWIT
QAEDIDPENEEEGLDDDKPRNLSMPASENESVNTDNPPGGDVEGETCCTRLAIRISKSKF
SRYSRRWNRLFRRKCRAAVKSQVFYWLVIFLVFLNTLTIASEHHRQPQWLTDVQDIANKV
LLALFTGEMLLKMYSLGLQAYFVSLFNRFDSFVVCGGILETILVETKIMSPLGISVLRCV
RLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDET
RRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYIL
LNVFLAIAVDNLADAESLTSAQKEEEEAKERKKLARLASPEKHQENEKPPLEEKKSEKIE
LKSITSDGETNTATKINMDDCCGDESEEKNPYPANDYIGDDDEEEPEMPVGPRPRPLSDI
HLKEKAVPMPEARAFFVFSHTNKFRVLCHKIVNHNIFTNLILFFILLSSISLAAEDPVKN
DSFRNQILGYADHVFTGLFTIEIILKMTAYGAFLHKGSFCRNYFNILDLVVVSVSLISSG
IQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFAC
IGVQLFKGKFFYCTDSSKQTQAECRGSYIMYKDGDVGKPERSPRVWENSDFNFDDVLQGM
MALFAVSTFEGWPGLLYRAIDSHAEDVGPIYNYRVVISIFFIIYIIIIAFFMMNIFVGFV
IVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKVWYVVNSTYFEYLM
FTLILLNTICLAMQHHGQTKNFNDAMNILNMLFTGLFTVEMILKLIAFKPRGYFSDPWNV
FDFLIVIGSIIDVILSEINPADSSSSSSSSSSSSSSSTSHPPVVRPMVRPDGNLARLPTS
STIPPSLHHSIPPTAMPSMGLQNSEENARISITFFRLFRVMRLVKLLSRGEGIRTLLWTF
IKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALRDLTQINRNNNFQTFPQAVLLLFRCA
TGEAWQEIMLACSPNRPCEKGSTNENSTASEDCGSQFAIIYFVSFYMLCAFLIINLFVAV
IMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLC
PHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAIVKKIWK
RTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKVPPKTALSLQAG
LRTLHDIGPEIRRAISGDLNVEEEMDKGMKEPVSAASEDDIFRVKRSGGLFGNHVNYYNQ
SDGRGSFPQSFTTQRPLHISQKGSPCEGESPSHEKLMDSTTFTPSSYSSSGSNANINNAN
NTGMAGVPPQGVSRFPSPSISTVDGHTGQPLTPILLPRSAWCFPPKRMFYDTLMRSDSSD
SHLPIIRRGEGSTEETYDESYGDDREYHEDDHSLSSDMLVYHDDTCRQLTPMEEAEEVEG
RRGSGGWQSPRRVFLCPTSLGRRSSFHLECLRRQPRPDVSQKTSAPLHLVHHQALAVAGL
SPQLRRSHSPTLFSRLCSTPPASPAGRCSDTSYQGVPSLRLEGSNSHEKLNTSLPSVSCG
PWYSDSNGNSRVPSPSPSVSASSQRAPRPVSLTVPSLLGKDSSSLSHGSAGSLVEAVLIS
EGLGHFAQDPSFIEATKAELADACDMTIEEMEQAANNILNGKTATNPSPSTSSTSQHSPN
GSLHPFHTTAAATHRDQVAGLTSSEGGAEAAGNRVSIHGPSSLEERQELLATERGQEEEE
EEVALREKHHRNSTVVAGARQRDSGLLEDEDMECVTSL
NT seq
6957 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgatagcaaaaacatgtacatcccggaggacacccttgagaaccatcaaggc
tccgattactctccccctacgcttcctcgccctcctcatccgggcctgacaaacgagcac
agtggtgtcggcagccatggcgatcgaagtggaggagggggcggggccaaccacggagtg
ggtgtggttggcctcgcacctgaacacatccccacgccgggggcggccctgagctggcag
gcggccatcgacgctgcgcggcaagcgaagatgatgggcaacgccgcgtcaggtggggga
gcgggactcgggtcgggagggggcgggcccatctctacggccagttccacacaaaggaag
agacaacactatagcgccaaacccaagaaacagaccacgacgacagccacgaggccgccg
cgggctctgctctgtctcacactcaagaacccgatccgcagggcctgcatcagcatcgtg
gagtggaaaccatttgagatcatcatcctgatgaccatctttgctaactgtgtggcctta
gccgtctacatcccttttcccgaggatgactcaaatgccaccaactccaacctggagcgt
gtggagtatctgttcctcatcatttttacagtggaggcgttcctgaaggttatagcctac
ggcctgctcttccaccccaacgcctacctgaggaatggctggaatctgctcgactttatc
attgtagttgtagggttattcagtgcaattctggagcaggccacaaagggggacggggcc
actcctatcggagggaaagcagcaggtttcgatgtcaaggctctgagagctttccgagta
ctcagacctctaagactggtctccggagtaccgagtttacaggtagtgttgaactctata
atcaaagccatggtcccgctgctccacattgccctgttggtcctctttgtcatcatcatc
tacgccataattggcctggagctcttcatgggcaagatgcacaagacctgcgttcacaac
cacacaggcttgaatgcagaggaaaagccggcaccgtgcgcgccggatggtgcctacggc
cgccactgcacgcagaacggaacccagtgccgagtgggatgggagggtccaaacgatggc
atcaccaactttgacaactttgccttcgccatgttaacggtgtttcagtgcataaccatg
gaaggctggacggacgtgttgtactgggtcaatgatgctgtagattacaggtggccctgg
gtgtattttgtcaccttaatcatcattggatccttctttgtgttaaacttggttcttggg
gtgttaagcggagagttttctaaagaaagagagaaggccaaagcgcgtggcgacttccag
aaactcagagaaaagcagcaactagaggaagacctaaagggctatttagactggatcact
caggctgaagacattgacccagagaacgaagaggaaggtttagatgacgacaaaccgaga
aacctgagcatgccagccagtgagaatgagtcggtcaacacagacaaccccccaggggga
gacgtggagggggagacctgctgcacccgactggcaattaggatctccaaatccaagttc
agtcgttactcccgaagatggaacaggctgttcaggaggaagtgccgcgccgccgtcaaa
tcccaggttttttattggctggtcatcttcctggttttcctcaacactctgaccatcgcc
tctgaacatcaccggcagcctcaatggctgacagacgtacaagacatagccaataaagta
ttactagcacttttcactggtgagatgctgttaaagatgtacagtcttggtctccaggcc
tactttgtttccctcttcaatcggtttgacagcttcgtagtgtgcggaggaatcctggaa
acgatcctagtagaaacgaagatcatgtctcctctcggcatctctgtgttacgatgcgta
cgcctgctcagaatcttcaagataaccagatattggaactcgctgtccaacctggtggct
tccctcctcaactccgttcgatccatcgcctccctgctgctcctgctcttcctcttcatc
attattttctccctgctgggcatgcagctctttgggggaaagttcaactttgacgagaca
cggcgcagcacctttgacaactttcctcagtccttgctcaccgtgtttcagattctcaca
ggagaagactggaactctgtgatgtatgatggcattatggcgtacggcggtccgtccttt
ccgggcatgctggtctgcatctatttcatcattctcttcatctgcggaaactatatcctc
ctgaatgtcttcttggccatcgctgtggacaatctggcagatgcagagagtctgacctcg
gcccagaaggaggaggaggaggcaaaggagaggaagaaactggccaggcttgctagtcct
gagaaacatcaagagaatgaaaaaccacctttagaggaaaagaagagtgaaaagatagag
ctgaagtcaattacctccgacggggaaaccaacacggctacaaagatcaacatggacgac
tgctgcggagatgagagcgaggaaaagaacccgtatcctgcaaatgattacataggagat
gatgatgaggaagaaccagaaatgccagtgggcccaaggccgcgtccgctctctgacatc
cacctaaaggagaaggccgttcccatgcctgaggcccgcgcattcttcgtcttcagccac
accaacaaattcagggttctgtgccataagatcgtcaaccacaacatcttcaccaacctc
atcctcttcttcatcctgctcagcagcatcagcctcgcagcggaggacccggtcaagaac
gactcattcagaaaccagattctggggtatgcagaccacgtcttcactggactcttcacg
atagaaatcattcttaagatgacagcctatggagccttccttcacaaaggctcattctgt
agaaactatttcaacatcctggacttagtagtggtcagtgtgtccctcatctcctctgga
atacagtccagtgcaattaatgttgtaaagatcttgagagtcctgcgagtgctcagacca
ctgagggccatcaacagagccaaaggactgaagcatgtggtgcagtgcgtgtttgtggct
atcaggaccattggcaacattgttatcgtcaccacgttgctgcagttcatgttcgcttgt
attggagtgcagctcttcaagggcaagtttttctactgcactgacagctctaagcagact
caggcagagtgcaggggttcctacatcatgtataaagatggagacgtgggaaagccagaa
agatccccaagagtttgggagaacagtgacttcaactttgacgatgtcctacaaggaatg
atggctttgtttgcggtgtctacttttgagggctggcctgggttactgtaccgggccata
gactctcatgctgaggatgtggggcctatctacaactaccgtgtggtcatttccatcttc
ttcatcatttacatcatcatcattgcttttttcatgatgaacatcttcgtcggtttcgtc
atcgtcacgttccaggagcagggggagcaagagtataagaactgtgagctggacaagaac
cagcgtcagtgcgtggaatatgccctcaaggctcgtcctctgcgccgctacatccccaag
aacccgtaccagtacaaggtgtggtatgtggtcaactccacctactttgagtacctgatg
ttcacactcatccttctcaacaccatctgtctggccatgcagcatcatggccagaccaaa
aatttcaacgacgcaatgaacatcctcaacatgctcttcactgggctgttcactgtagaa
atgatccttaaactcatcgccttcaaacccagggggtactttagtgatccctggaatgtg
tttgatttcctcatcgtaattggcagcataatagacgtcattctcagtgaaatcaaccca
gctgactcctcctcgtcctcgtcctcttcgtcctcctcttcctcctcttccacctctcac
ccccctgtggtaaggccaatggtacgccctgacggtaacctcgcccgcctccctacctcc
tccaccatccctccatccctccatcattccatccctcctactgctatgccgtccatggga
ctgcagaactcagaagagaacgccaggatctccatcaccttcttccgactgttccgcgtg
atgaggctggtgaagctgctttctcgcggggaagggattcggaccctgctgtggaccttc
atcaaatctttccaagccctgccctacgtagctctgcttatagtgatgctcttcttcata
tacgcggtcattggcatgcagatgtttggtaaaatagccttgcgggatctcacacaaatc
aacaggaacaacaacttccagacattccctcaagcagtgctgctgctcttcagatgtgcg
acaggcgaggcatggcaggagatcatgctggcatgttcacccaaccgaccctgtgagaaa
gggtcgaccaacgaaaacagcaccgccagtgaggactgcggcagccagtttgccatcatt
tactttgtcagcttctacatgctctgtgcctttttgatcatcaatctgttcgtggctgta
attatggacaactttgactacctgacacgggactggtcgatccttggaccacaccatctt
gatgaattcaaaagaatttgggcggaatacgacccagaagctaagggtagaataaaacat
ctcgatgtggtcactttgctccggagaattcagcctcccctgggatttggaaagctatgc
ccacacagggtggcctgcaagcgtttggtgtcaatgaacatgcctctaaacagtgatgga
acggtgatgttcaacgccacgctgtttgctttggtcagaactgccctcaggatcaagact
gaaggaaacttggagcaagctaacgaagaactgagggcgattgtaaaaaagatctggaaa
agaacgagcatgaaactactggatcaagtagtgccccctgctggtgatgatgaggttaca
gtcgggaagttctacgccactttcctcatccaagagtatttccgcaagtttaagaagagg
aaagaacaagggctggtgggcaaagtgcccccgaaaactgcgctctctctgcaggcgggc
ctgcggacgttgcatgacattggtccagagattaggagagccatctcgggagacctgaat
gtggaggaggagatggacaaaggcatgaaagaaccggtgtcagcagcttctgaggatgat
atcttcagggtaaagcgatctggaggtttgtttggcaaccatgtcaactactacaaccag
agcgatggccgcggctccttcccacagtccttcaccacccagcgtcccttgcatatcagc
cagaaaggctccccttgcgaaggcgagagcccgtcccacgagaagcttatggactcaacc
accttcaccccttcctcctattcatcatcaggctccaacgccaacatcaacaatgccaac
aacaccggcatggcaggggtacccccccagggtgtcagtcgattcccgagcccttctata
agcactgtagacgggcacacggggcagccgctgacacccatcctgctgccaagatctgca
tggtgcttccctccgaaaaggatgttttatgacaccctcatgcgctccgactccagtgac
agtcacctgccaatcatccggagaggggaggggtcaacagaggagacgtatgatgagagc
tatggtgacgacagagagtaccacgaagatgatcactcgctttcgtctgacatgttggtg
tatcatgatgacacatgcaggcagctaactcccatggaggaagcagaagaagtagaggga
agaagaggaagtggagggtggcagtctccacgaagagtcttcctctgcccaacctctcta
ggacggagatcgtccttccacctggagtgtctccggagacaaccaaggccagacgtctct
cagaagacgtctgcacctttacatcttgtacatcaccaggctttagcagtggcagggttg
agtcctcagctgagaaggagtcactcacccaccctgttcagccggctgtgctccacgcct
ccagccagtcctgcaggccgctgcagtgacacctcctaccagggagttccctccttgagg
ctagagggctccaactctcatgaaaagctcaataccagcttgccttctgtcagctgtggg
ccctggtacagcgacagtaacgggaacagccgggttcccagccccagccccagcgtgtca
gcgtccagtcaaagagctccacggccagtgtcgctcacggtaccctcgcttttggggaag
gactccagttcgctgtctcatggcagcgcgggcagtctggtggaagcggtcctgatatca
gaaggtttgggtcatttcgcccaggatccttcgttcattgaggcaaccaaagccgagttg
gctgacgcctgcgacatgacgatagaggaaatggagcaggctgccaacaacattctcaat
ggcaagactgccacaaacccctcacccagcacctcttccacctctcagcacagcccaaac
ggcagccttcatcccttccacacaacagcagcagcaacacacagggaccaagtggctggc
ttgacctcgagcgaaggcggggcagaggcagcaggaaacagagtgtccatacatggaccg
tcctctttagaggagcggcaggagttgctagccacggaaagggggcaagaagaggaggag
gaagaggtggcactgagggaaaagcaccatagaaattccactgtcgtcgcaggagcgcga
cagagggacagcgggcttttggaagacgaggatatggaatgtgtaacgagcttgtag
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integrated database retrieval system
