Oryzias melastigma (Indian medaka): 112161172 Help Entry 112161172         CDS       T07439                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism oml  Oryzias melastigma (Indian medaka) Pathway oml04010   MAPK signaling pathway oml04120   Ubiquitin mediated proteolysis oml04140   Autophagy - animal oml04144   Endocytosis oml04620   Toll-like receptor signaling pathway oml04621   NOD-like receptor signaling pathway oml04622   RIG-I-like receptor signaling pathway oml05132   Salmonella infection oml05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:oml00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     112161172 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     112161172 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     112161172 (traf6)    04140 Autophagy - animal     112161172 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     112161172 (traf6)    04621 NOD-like receptor signaling pathway     112161172 (traf6)    04622 RIG-I-like receptor signaling pathway     112161172 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     112161172 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     112161172 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oml04131]     112161172 (traf6)    04121 Ubiquitin system [BR:oml04121]     112161172 (traf6) Enzymes [BR:oml01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      112161172 (traf6) Membrane trafficking [BR:oml04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     112161172 (traf6) Ubiquitin system [BR:oml04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     112161172 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 TRAF6_Z2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 TRAF3_RING RING_XB3-XBAT31 HD-ZIP_N zf-rbx1 U-box CEP104_ZnF DM zf-RING_11 BLI1 zf-TRAF_2 Motif Other DBs NCBI-GeneID:  112161172 NCBI-ProteinID:  XP_024151979 Ensembl:  ENSOMEG00000004508 UniProt:  A0A3B3D1S8 LinkDB All DBs Position LG3:complement(98094..109752) Genome browser AA seq 569 aa AA seqDB search MACFDSNKGSLEYDGIEGACGEALSECASAMLEKERESLPSPSDNPNGSMSSSSLQASAP LQGYDVEFDPPLESKYECPICLMALRNAIQTRCGHRFCKSCIEKSIRDTGQRCPVDNEML SEDQLFPDNFAKREILSLTVRCPNSDCGEKMELRHLENHLAQCQFATVPCPQCQQPVRKT FLEEHMTVECPRRPMSCPECVAVFVFEEREMHEQQCPFASVMCQYCEMDLIRDQMESHCD TDCPKAPIACTFSIFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLALNGTAPKPLHF LGASVSCRDQGAGASVPNCSVASGALSCSSSAASSQPSEEMQRIREMDARLVKQDHQLRE LIILKDTQAGQLAELRRRVLVLEETVKELEAQQNHGIFIWRLKSFSTHLRNQEAGIPVVE HSPGFYTGRPGYKLCLRLHLQTPTAPRCSNFISLFVHTMQGVFDSHLTWPFQGTIRLAIL DQGPEGQHHMEVMETKPDLQAFQKPINQRNPKGFGYVTFMHRSLLSQRAYVKDDTLLIRC EVTPRFDSGFNREGPAVQPRGPEASLSRD NT seq 1710 nt NT seq  +upstreamnt  +downstreamnt atggcttgctttgacagcaacaaggggagtttggaatacgatggcatcgaaggagcttgt ggtgaagcgctgtcggaatgcgcctcagcgatgctggagaaggaacgggagtcccttccc agcccatcagacaacccaaacggctccatgagcagctccagtctccaggcctcagccccc cttcagggctacgatgtggagtttgaccctccgctagaaagcaagtacgaatgcccgatc tgcctcatggccttgaggaacgccattcagacgcgctgtggtcatcgtttctgcaaaagc tgcattgagaagtccatccgcgatacaggacagcgatgccctgtggacaacgaaatgctg tcagaagaccaactgtttcctgataattttgccaaaagggagattctttcgctcactgtt cgctgtccaaattccgactgtggtgagaaaatggagcttcgacatttagagaatcatttg gcgcagtgtcagtttgctaccgtgccatgcccacagtgccagcagcctgtgagaaagacc ttcctggaggagcacatgactgttgagtgtccaaggagacccatgtcgtgtccagaatgt gtggccgtctttgttttcgaggaaagagagatgcacgagcagcagtgtccctttgctagt gtgatgtgccagtactgtgagatggacctcatcagagatcagatggaatctcattgtgat actgactgcccaaaagcaccgattgcttgtacctttagcatatttggatgcaaggaaagg atgcagcgccacaacctggctcagcacatgcaggagttcacgcagatgcacatgcgctac atggccgagtttctgcgtggcctcgccctcaacggcactgcgcccaaacccctgcacttt ctgggagcttccgtgtcctgtagggatcagggagctggagcgtcggtgccaaactgcagc gtggcctctggagctttgagctgcagcagcagcgccgcttcgtctcagccgagcgaggag atgcagagaatccgagaaatggacgcacggctggtgaagcaggaccatcagctgcgagag ctcatcattctgaaagacacgcaagcaggtcagctggcagagctcaggcggagggtattg gtattagaagaaactgtgaaggagctggaggctcagcagaaccacggcatcttcatctgg cggctcaaatccttctccactcacctgcgaaaccaagaagccggcattccggtggtggag cacagccccggcttctacacgggccggccgggctacaagctgtgcctccgtttacatctg cagacccccaccgctccccgctgctccaacttcatctctcttttcgtccacaccatgcaa ggcgtctttgacagccacctgacctggcccttccaagggaccatccggctcgcgatacta gaccagggacccgagggtcagcaccacatggaggtcatggagaccaagccagaccttcag gcctttcagaagcccatcaatcagcgaaaccccaaaggatttggctacgtcacctttatg caccgctctctgctgagtcagagagcttatgtcaaggatgacacgcttcttattcgctgt gaggtgacgccgcgttttgacagtgggtttaaccgcgagggacctgctgtccagcccaga gggcccgaagcatcactgtcgagggactga

DBGET integrated database retrieval system