Oryzias melastigma (Indian medaka): 118599223
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Entry
118599223 CDS
T07439
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
118599223
Cell adhesion molecules [BR:
oml04515
]
Cadherins
Protocadherins
118599223
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
118599223
NCBI-ProteinID:
XP_036069796
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Position
LG10:complement(13890044..13893139)
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AA seq
836 aa
AA seq
DB search
MGFTEGGIMRTSLPTWRALSWWHHLFLLWSTIDAQTRYSIPEELKAGSVVGNIAKDLGLV
VSQLYRRELRITSEAGKQYFNVDLGKGELVVAERIDREDLCGQKASCLLPLELVINNPLQ
LHRIEIEILDTNDNSPVFATKEKVVKIAELVNPGARFPLEAAQDPDVGINSVRSYLLNKN
EHFKLSVKSQKDGRKTPELVLEKPLDRERLPVHNLILTAVDGGDPVLSGTSDITVIVLDI
NDNAPRFERNAYETNVSENVTPGYEVLRVKATDEDEGLNGEIEYFFAEQTADLILSLFYI
ESSTGNIVVKGVLDREKNAFHRFDVTAKDKGNPEMDGHCSVEVRVLDINDNIPEIIVTSL
TSPVPEDSAVGTVIALLSARDPDSGDNGKVTLKVSSDSPFKLNPSVSNHYSLVTNGKLDR
EMYSYYEVKIIAADSGKPALKSEKIILVELLDTNDNPPVFTQRSYNVYLKENGVPGSILF
SVSASDLDSGENAKISYSILDSKVQDVSVSSYVYMNSENGSIYSMHSFDYEKLKVFEIHV
QAKDQGSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKAGHLVTKVT
AVDADSGHNAWISYRLAEATDASLFSVNLYTGEVRTKRAVSEQDDSSQRLILEIKDDGEP
LQSATVTVSILLEDALHEPISELRLHKASEPSKKSGRITLYLILSLASVSVLSLLTFVIL
AVKCMRSSRSSGSCCSMRRQDSEDYKNPNRNLQIQLNTDGPIKYVEVLGGDMMSQSQSFR
SCMSPMSEYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVSRKKTFKIFY
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgggatttacagaaggtggaataatgcggacgagcctgccgacatggcgggcgctttcg
tggtggcaccacctctttctgttgtggagtacaatagacgctcagactcgctacagcatc
ccggaggaactgaaagcgggatctgtggttggaaatatagcgaaggatttgggtttggtt
gtttctcagctgtaccggcgtgagctgcggataacgtctgaagctgggaagcagtacttt
aacgtcgacctggggaaaggagagctggtggtggctgagaggatagacagagaggatctg
tgtggacaaaaggcgtcgtgtttgctgcctttggaattagtcataaacaacccgctgcag
ctgcacagaattgaaattgaaatcctcgacacaaacgacaactctcctgtttttgcgaca
aaagaaaaagtggtcaaaattgcagagctggtaaatccaggtgcacgctttccgctcgaa
gctgcccaggatccggatgttgggatcaattccgtgcgctcgtatctactgaacaaaaac
gaacattttaaattgtcggtcaaaagtcagaaggacggcaggaagacgcccgagctggtg
ctagagaagccgctcgacagagaaaggctgcccgtgcacaacctcatcctcactgctgtg
gacgggggagatccggtgctatcaggaacatctgacataacagttatagtccttgatatc
aatgataacgctccacgcttcgaaagaaacgcatacgaaactaatgtaagtgaaaacgtg
actcccggatatgaagttttgcgcgttaaagctacagatgaggatgaaggattaaacggg
gaaattgaatatttttttgcagaacaaactgcggatctaattttgtctcttttttatatt
gaatcctccactgggaatattgttgtgaaaggagtcttagatcgcgaaaaaaacgctttt
caccgatttgatgtcactgctaaagacaaaggcaaccctgagatggatggacattgtagt
gtagaagtgagagtgctagatattaacgataatattcctgaaattattgtaacgtcctta
actagtccggttccagaagattcggcggttggtaccgtaatcgcactattaagcgcacga
gatcccgattcaggtgataatggtaaagttacgctgaaagtttcttctgattcgccgttt
aagttaaatccatccgtctcaaatcattattccttagtgacgaatggtaaacttgatcgg
gaaatgtatagttattatgaagtaaaaattattgccgcagattctgggaaacccgctcta
aaaagtgaaaaaataatcctcgttgaactcttagatacgaatgacaaccctccagttttt
acgcagcgttcttataacgtgtatttgaaggagaacggagttccgggttctattctgttc
tcagtgtccgcgtctgatctggattcaggtgaaaacgcaaagatctcttactccatcctg
gactctaaagttcaggacgtgtccgtgtcctcctatgtttacatgaactcagagaacggc
agcatctacagcatgcactcgtttgactatgagaagctgaaggtgtttgagatccacgtt
caggccaaggaccagggctctccttctctcagcagcaacgctactgtccacgtctttatc
ctggaccagaacgataacgcccccgccgtcatttacccctcgtccgctgctctgggctcc
ctgtctcatcagaggatgccccgctccgccaaagcgggtcacctggtcaccaaggtgacg
gcggtggacgcggactcgggccataacgcctggatctcctacagactggcggaggccaca
gacgcctctctgttcagcgtcaatctgtacacaggagaggtgaggactaaacgcgctgtg
tccgagcaggacgactcctctcagaggctgatcctggagatcaaagacgacggagagccg
ctccaatccgccaccgtcaccgtgtccatcctgctggaggacgctctccatgagcccatc
tcagagctgcgactccacaaagcgtccgagcccagcaagaaaagcggcagaatcaccctt
tatctgatcctgtctctggcctcggtgtccgtgctgtctctgctgacgtttgtcatctta
gcggtgaaatgcatgaggagcagcagaagcagcggcagctgctgcagcatgagacgccaa
gactctgaggattacaagaaccccaacagaaacctgcagattcagctcaacaccgatgga
cccatcaagtacgtggaggtcctgggaggagacatgatgtctcagagtcagtccttcagg
tcctgcatgtctcccatgtcagagtacagtgatttcactctgattaaacccagcagcacc
acagactttaaggaggtcatcagtgtgctggacgcctctttacctgacagtacctggacc
tttgagagtcagcaggtgagcaggaaaaaaacttttaaaatattttattaa
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