Oncorhynchus masou masou (cherry salmon): 135508241
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Entry
135508241 CDS
T10723
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04115
p53 signaling pathway
omm04145
Phagosome
omm04148
Efferocytosis
omm04350
TGF-beta signaling pathway
omm04510
Focal adhesion
omm04512
ECM-receptor interaction
omm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135508241
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135508241
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
135508241
04148 Efferocytosis
135508241
09143 Cell growth and death
04115 p53 signaling pathway
135508241
09144 Cellular community - eukaryotes
04510 Focal adhesion
135508241
09142 Cell motility
04820 Cytoskeleton in muscle cells
135508241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
omm04131
]
135508241
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
omm00536
]
135508241
Membrane trafficking [BR:
omm04131
]
Endocytosis
Phagocytosis
Opsonins
135508241
Glycosaminoglycan binding proteins [BR:
omm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135508241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_ADAMTS
VWC2L_2nd
EGF_3
TSP1_CFP_C
cEGF
Laminin_G_3
TSP1_CCN
EGF
Motif
Other DBs
NCBI-GeneID:
135508241
NCBI-ProteinID:
XP_064784370
LinkDB
All DBs
Position
21:complement(35484550..35494015)
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AA seq
1172 aa
AA seq
DB search
MKLIGVFLLLVLWTCEGSRVAESGDDNGVYDLFELVKVNKRHQGVTLVKGADPYSPAYKV
LNADLIPPVPEISFRDLIDSVQAERGFLLLVNFKQFKKTRGSILTVEKNDGSGPIFEIIS
NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFIGCEEINISEIDV
PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAIMRNKGCQSSETLADV
MTLDNPVNGSSPAIRTDYTGHKSKEIQQVCGFSCEDIASMFKELKGLGVVVKQLSNELNR
VNKESTLLMNQMRIHSGVCLHNGIVHKDKDEWTVDGCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG
RETEVCQKSPCPIDGVWGPWSLWDTCSVTCGGGFQTRQRLCNNPIPKYGGKECQGDGKTS
QLCGKEDCPIDGCLSNPCFAGAKCTSFDDGSWKCGACPVGYTGDGINCKDIDECKEVRDA
CFTLNGVHRCENTEPGYNCLACPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN
KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDRDDVGDRCDNCV
HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL
ENNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGMYVFSQEMTYFSDLKYECKDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgataggagtatttctccttttggtgctttggacttgtgagggcagccgggta
gcagagagtggagatgataacggtgtatacgacctattcgagcttgtgaaagtgaacaag
aggcaccaaggagttaccttggtgaaaggcgcagatccctacagcccagcctataaggtc
ttgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattca
gtacaagctgaaagaggattccttctcctcgtcaacttcaagcagttcaagaaaaccagg
ggtagtattttgactgtggagaagaatgacggatcaggaccgatattcgaaataatttct
aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg
tccatagaagatgcagatctagcgacaggacattggaagaatatcacgctgttcattcag
gaagatcgtgcccagctgttcatcgggtgtgaagagatcaatatatccgaaatagacgtg
cccatccaaaaggtcctgacgcatgaggttgctgacattgcccgtctgagaattggaaaa
ggagctgtgaaagacagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc
actttggaggcaatcatgcgcaataagggatgccaaagctctgaaacattggctgatgtc
atgaccctggacaacccagtcaatgggtctagcccagcaataagaactgattacactggc
cacaaaagcaaagaaattcagcaggtctgtggcttttcctgtgaggatatcgccagcatg
ttcaaggagctcaagggactcggcgtggttgttaagcagctgtcaaacgagctcaacaga
gtgaataaggagagcactctgctcatgaaccagatgagaatccacagtggggtctgtctt
cacaacggcattgtgcacaaggacaaagatgagtggaccgtggacggctgcacagagtgt
acctgccagaactctgccactgtgtgtcgcaaaatctcttgtcccctgatgccctgtgcc
aacgccaccgtgcccgatggagagtgctgcccacgttgtggaaccccgagtgactatgct
gaggatggctggtccccctggtctgaatggactcattgttctgtgtcttgtggacgggga
atccagcagcgaggtcgctcctgcgaccgcatcaacagcaactgcgagggcacctctgtg
cagacccgcgactgctaccctcaggaatgtgacaagcgcttcaagcaggatggtggctgg
agccactggtctccctggtcctcctgctctgtgacctgtggtgaaggagtcatcacccgc
attcgcctttgcaactccccaactccccagatgggaggcagagactgccaaggacagggc
agagagaccgaggtctgccagaaatcaccatgtccaattgatggagtctggggaccctgg
tctttatgggacacctgctctgtcacctgtggaggtggattccagactcgccagcgtctt
tgtaacaaccccatccccaaatacggaggaaaggaatgtcagggcgacggcaaaacatcc
caactgtgtggcaaagaggactgccctattgatggctgtctgtccaacccctgctttgct
ggtgctaagtgtaccagctttgatgatggttcctggaagtgtggcgcatgcccagtgggc
tacaccggagacggcatcaactgcaaggacatcgatgagtgcaaggaggtccgtgacgca
tgcttcacactcaacggagtccaccgctgtgagaacactgagcctggttacaactgcctt
gcctgcccccctcgctactcaggaccacagccctttgggaggggagtggagcaggccaca
gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcagccatgattgcaac
aagaatgccaactgtatctacctgggtcagttcagcgacactatgttccgctgtgagtgc
aaaccaggttatgctggcaatggtcacatctgtggagatgacactgacctggatggatgg
cccaacaaagacctcctgtgtgtggagaatgccacctaccattgcaagaaggacaactgt
ccaaaccttcccaactctggacaggaggatcacgacaaagatgggcttggtgacgcttgc
gatcacgatgatgacaacgatgggatccctgatgatagggacaactgcccaatggtctac
aaccccgctcagtatgatgtggacagagatgacgttggtgatcgatgtgataactgtgtg
catgagagcaaccccgaccaagttgacacagacaacaacggagagggggatgcctgtgct
attgacattgacggtgatggcattctaaatgagagggacaactgcccatacgtctacaat
gtggaccagagagacactgacggggatggagtgggagaccactgcgacaattgccctctt
gaaaacaacccagaccagattgactctgactcagaccgtgtgggagacaagtgcgacaac
aaccaggacattgatgaggacggtcatcagaacaacttggacaactgtccctatatcccc
aatgccaaccaggccgatcacgacaaagacggcaagggtgacgcctgtgaccacgatgat
gacaacgacggtatccctgacgacaaggacaactgtaggctggcctttaaccctgaccag
ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagacaac
attcttgatatctacgatgtgtgccctgagaactttgccatcagtgagacggacttccgc
aggttccagatggtaccactagaccccaagggaacctcccagatcgaccctaactgggtg
gtccgtcaccagggcaaagaactcgtgcagaccgtcaactgtgaccctggcatcgctgtt
gggttcgatgagttcaacgcagtggacttcagtggaacattctttatcaacacagacagg
gacgatgactatgctggatttgtgtttgggtaccagtccagctccaggttctacgtggta
atgtggaagcagatcacacagacctactggtcccacacgccgaccagagctcagggctac
tccggagtgtccatcaaagtggtcaactccaccacaggacctggggagcatctgaggaac
gccctctggcacaccggtgacactgctggacaggtgcgtactctgtggcacgaccccaag
aacatcggctggaaagactacactgcctacagatggcacctgatccacaggcccaagtct
ggactcatcagagttgtgatgtatgaaggcaagagaatcatggccgattccggaaatatc
tacgacaagacctatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca
tacttctcagacctcaaatatgaatgcaaagattcttaa
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