Oncorhynchus masou masou (cherry salmon): 135512355
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Entry
135512355 CDS
T10723
Name
(RefSeq) latent-transforming growth factor beta-binding protein 1-like isoform X1
KO
K19559
latent transforming growth factor beta binding protein 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
135512355
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
omm04990
]
135512355
Domain-containing proteins not elsewhere classified [BR:
omm04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
135512355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_CA
cEGF
TB
EGF
EGF_3
hEGF
FXa_inhibition
Plasmod_Pvs28
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
135512355
NCBI-ProteinID:
XP_064790378
LinkDB
All DBs
Position
24:complement(56405440..56534999)
Genome browser
AA seq
1729 aa
AA seq
DB search
MAWIRWDLFFSIGLFISPAFVSTDQSGFRRYYVLQPGPSGTDRVHVSSISSRSGATGQPH
AYNVELSASYSGQVRTRRMGNQANPIPLRQDTQFTQHQQVIRRTSHNLQQSHQMKMSGVN
VCGGQCCHGWSKASGSQQCTKPNCLPQCQNGGMCLRPQLCVCKSGSKGKACEQNTMPTSS
YPAQPGNGHTNGHSNGHTNGHSNGHTKGHNVVPQRPIPQQGYIPGPVPVSNMAQMTLTVK
KSPHLVRPQQIQPGSQQFVRKPKYYHTQTTHTQTHVQHQPDRPIPLTVGHNPIHVGNHTG
RIKVVFTPTICKVTCTGGRCQNNCELGNTTTIVSENGHAADTLTAPNFRVVVCHLPCMNG
GKCSARDKCQCPPTFTGKFCQMPVQNGNGQQRQNGQQQTSQIHSTHTLPLTFSNGQNPVK
YAPSIVNIHVKHPPEASVQIHQVSQLDANGQKVKGNGQNGHSQTQSHYTYHHSESSQKIQ
QQGHNIIYPNLQSYVPQYQPVSNSQLGRCFQETTGTQCGKALPGLSKQEECCQSIGTSWG
FHKCQKCPKPSIPLTAGGSRQAMDCPQGYKRINNSHCQDLNECQLQGVCPNGDCLNTIGS
YRCSCKAGFIPDPTLSTCIPDTPAVHEEKGACFRLVSSGKQCLHPVPAQLSKQLCCCSVG
KAWGPRCDKCPLPGTAKFKEICPGGMGYTVTGSYKPKPPNQLPKLPSQPETINKPMITHQ
EPVAPPLPFPTPEKPVEALSVTERQLPSIPVATEAPEQELVILEATSSRPVVEVEAGQPQ
LSPGVSTMRMEPAYPEVVEKTSPPAPALILPSNAGQDIAPTQSAEVDECQVNPHICGQGI
CYNTVEGYTCICREGYQMDETHTTCVDVDECLESASLCSNGRCRNTPGSFLCVCQPGFMT
DEEGTSCIDLNECLNSHACPEDGFCVNNVGSYICRHCDSGFRMSPTGQCEDIDECLDMGV
CPSGMCVNLLGSYECDSCPEGFQGQGGQCVDVDECLHQSTCANGKCSNFEGYFVCSCNDG
FTLSLDGQSCEDVDECQDEQVCTRGHCQNTVGSYLCNCGPGFRASPAGDQCDDVDECQEL
TMPCDSVGQCVNNMGSYHCSCPQGYQQINGTSCLDVDECLDDPELCSPHGECLNADGSFY
CVCERGFAAGQDTHTCEDMDECSDDTRCVGGSCENSQGSYRCQCDTGYRLQPDTDTCLDI
DECAELGQSICGAWLCENTEGSYRCVVDCPPGHDRGPEGICVDTDECNVNATVCGNHGFC
ENTVGSFRCLCDRGYQESQEGLGCVDVNECELLSGVCGEALCENVEGSFLCMCSDEDQEY
NQMTAKCSPAPTASSVERKECYYNLNDENLCENVLTSSVTMEECCCTLGAGWGDNCEVHP
CPVQGTDQFSQMCPAGRGNVPTGDTVFGVTAAESSKDADECALFGQEICKDGFCLNSPGS
YECYCKTGLYYDEVKLQCRDIDECQDESSCSGGECLNTQGSYMCFCTRPMVLDSDNKRCV
IAPEVAEQHSVQTDYQGICWQTVTGTRKTCTKPLANRKTTFTECCCLHGEAWGMDCALCP
LKNTEDYASMCNVPMREGQGRPYGRDALVAEPVQEYEVNLDYEPRPDQPGALSLYEDEEI
AYDAFEGLRAEECGILNGCENGRCVRVQEGYTCDCFDGYTLDMSRMACVDVNECSELNNR
MSLCKNAKCINTEGSYKCVCLPGYISSEQPNYCVAREQEAAAAARTERE
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggcttggatcagatgggacctattcttttctataggtttattcatttcaccggcattt
gtctccacggatcagagtggctttaggagatactacgtgttgcagccaggaccgagcggg
acggacagagtacatgtgagttccatctcttcgcgctccggtgccactggacagccccat
gcctacaatgtggagctctcggccagttacagtggccaggtccgaacccgtaggatgggt
aaccaagcgaacccgatcccgcttcgccaggacacacagtttacgcagcatcagcaagtc
attcggcgcaccagccacaaccttcaacagagtcaccaaatgaaaatgtcaggggtgaat
gtctgtggagggcagtgctgtcatggatggagtaaggcctctggatcgcagcagtgcaca
aagcccaactgtctgccccagtgccagaatggaggaatgtgtctgaggccccagctctgt
gtctgcaagtcgggctccaagggcaaagcatgtgaacagaacaccatgcccacctcctcc
tacccagcgcagccagggaacggccacaccaatggacacagcaatgggcacaccaatgga
cacagcaatgggcacaccaagggacacaacgtagtgccccagcggcccatcccccagcag
ggttatattcctgggccagtccctgtcagcaacatggcccagatgaccctgactgtcaag
aaatccccccacctggtccggccccagcaaatccagcctggtagccagcagtttgtccgg
aagcccaagtactaccacacacaaaccacacacacacagacacatgtccagcatcagcct
gacagacccattcccctgacagtgggacacaaccccatccacgtggggaaccacacggga
cggatcaaggtggtcttcacacccaccatctgcaaagtgacctgcacaggggggcggtgc
cagaacaactgtgagctgggcaacaccaccaccatcgtcagtgagaacggccatgccgca
gacaccctcactgcccccaacttcagagtagtggtatgccatcttccctgcatgaatggt
ggaaagtgcagtgccagggacaagtgtcagtgcccgcctaccttcacagggaagttctgt
cagatgcctgttcagaacgggaatgggcagcagcgccagaatggacagcagcagacgtcc
cagattcactccactcatactctgccgctcaccttcagcaatggacagaaccctgtgaaa
tatgcccccagcatcgtgaacatccacgtgaagcatcctccagaggcctcggtgcagatc
caccaggtctcccagctggatgccaatgggcagaaggtgaaaggcaatgggcagaatggc
cactcccagacccagtcccactacacctaccaccactcagagagcagccagaagatccag
cagcagggacacaacatcatctaccccaacctgcagagctacgtaccccagtatcagcct
gtctccaacagccagctgggacgctgtttccaagagaccactggcacacagtgtggcaag
gccctccctggtctcagcaagcaggaggaatgctgtcagagcattggaacatcctggggg
ttccacaaatgccagaagtgcccaaaaccatctattcctctgacagctggaggatccaga
caggcgatggactgcccccagggatacaagcgcatcaacaactcccactgccaagatctt
aatgagtgccagctgcagggcgtgtgtcccaacggagactgtctgaacaccataggtagc
tacaggtgcagctgtaaggccggcttcatccctgaccctaccctctccacctgtatccct
gacacccctgccgtccacgaggagaaaggggcttgtttccgattggtcagttcggggaag
cagtgtttgcacccagtgcctgctcagctgagcaaacagctgtgctgctgcagtgtgggc
aaggcctggggcccgcgctgcgacaagtgccccctgccaggaacagctaaattcaaggag
atatgtcctggtgggatgggctacactgtcacaggctcttacaagcccaaaccacccaat
caactacccaaacttcccagccaacctgagaccatcaacaagccaatgatcacccaccaa
gagcctgtagccccgcctctgcccttcccgacacccgagaaaccagtggaggccttgagc
gtcactgagagacagcttccctctattccagttgccacagaagcacctgagcaggagctg
gttattctggaggctactagtagtaggccagtagttgaggtcgaggctggccagccacag
ctctctcccggtgtctctaccatgaggatggagccggcctacccagaggttgtggagaaa
acgtccccccctgctccagccctgatcctcccctccaacgctggccaggacatcgccccg
actcagtcagcagaggtggatgagtgccaggtcaaccctcacatctgtggccaggggatc
tgctacaacactgtggagggttatacctgcatctgtagagagggctaccagatggatgag
acacacaccacctgtgtcgatgttgatgaatgcctggagtctgcatcactgtgctccaac
ggccgctgcaggaacactcctggcagcttcctgtgtgtgtgccaaccaggcttcatgaca
gatgaagagggaaccagttgcattgatttaaacgagtgtctgaactcccacgcttgtcct
gaggatggcttttgcgtcaacaatgtgggttcctacatctgtcggcactgtgacagcggc
ttcaggatgagcccaacaggccagtgtgaagatatagatgagtgtctggacatgggtgtg
tgtccatccggcatgtgcgtcaacttgctgggctcttatgagtgtgattcgtgtccagag
ggcttccagggccagggaggacagtgtgtcgatgtagatgaatgcctgcaccagtcaact
tgtgccaatgggaagtgctccaactttgagggatattttgtctgctcgtgtaacgatgga
ttcacactcagcctagatggacaatcatgtgaagatgtggatgagtgccaggatgagcag
gtgtgtaccagggggcactgccagaacactgtgggttcttacctgtgtaactgtgggccg
ggctttagggcctccccggcgggggaccagtgtgacgatgtggatgagtgccaggagctg
accatgccctgtgacagtgtgggccagtgtgtcaacaacatgggctcctaccactgtagc
tgcccccagggctaccaacagatcaacggcaccagctgcctagatgttgacgagtgtctg
gacgacccggagctgtgttccccacacggggagtgtctcaacgccgatggctccttctac
tgtgtctgtgagagaggcttcgctgcaggccaggacacacacacctgtgaagatatggat
gagtgctcggatgacaccaggtgtgttggcggctcctgtgagaacagccagggttcctac
agatgccagtgtgacactggctaccgcctgcagccagacactgacacatgcctggatatc
gatgagtgtgcagagttgggccagagtatctgtggggcgtggctctgtgagaacacagag
ggctcctataggtgtgtggtggactgcccccccggacacgaccgtggcccagaaggcatc
tgtgttgatactgatgagtgcaacgtcaacgccacggtgtgtggtaaccacggcttctgt
gagaacacggtcggttccttccgctgcctctgtgaccggggctaccaggagtcccaggag
ggcctcggctgcgtggatgtgaatgagtgtgaattgctgagcggtgtgtgtggcgaggcc
ctgtgtgagaacgtggagggctcgttcctgtgtatgtgctccgacgaggaccaggagtac
aaccagatgaccgccaagtgcagtcccgctcccacagcctcgtcagtagagaggaaggag
tgttactacaacctcaatgatgagaacctgtgtgagaacgtgctgaccagcagtgtcacc
atggaggagtgctgctgtacgctgggggcaggctggggggacaactgtgaggtgcacccc
tgccccgtccagggcactgatcagttttcccagatgtgtccagctgggagaggcaatgta
cccactggtgacactgtgttcggagtgaccgcagccgagagttctaaagatgcagatgaa
tgtgcgttgtttggccaggagatctgtaaggatggcttctgcctcaacagcccagggagc
tacgagtgttactgtaagactggcctgtactacgacgaggtcaagctgcagtgcagagac
atcgatgagtgtcaggatgagtcgagctgttcggggggagagtgtttgaacacacagggc
tcctacatgtgtttctgtacccgccccatggtgttggactctgacaacaagcgctgcgtg
atcgcccctgaagtggctgagcaacactctgtgcagactgactaccagggtatttgctgg
cagacggtaacgggcacccggaagacttgcaccaagcccctcgccaacagaaagaccacc
ttcacagagtgctgctgtctgcatggagaggcctggggcatggactgtgccctttgcccc
ctgaagaacacagaggactatgcctccatgtgtaacgtgccaatgagggaaggacagggg
cgtccgtatggtcgcgacgcccttgtggctgagcccgtccaggagtatgaggtcaacttg
gactatgaacctcgccccgaccagcctggtgccctgtccctgtacgaggatgaggagatc
gcgtacgacgcgtttgagggcctgagagcggaagagtgtggcattctgaacggctgtgag
aacgggcgctgcgtgcgggtacaggagggctacacctgcgactgcttcgacggatacacc
ctggatatgtcccgcatggcgtgtgtggatgtgaatgaatgttccgagctcaacaaccgg
atgtccctctgcaagaacgccaaatgtatcaacacggaaggatcctacaagtgtgtgtgc
ctgccaggatacatctcctctgagcagcctaactactgcgtggccagggaacaagaggca
gcagcagcagcgcgcacagagagggagtga
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