Oncorhynchus masou masou (cherry salmon): 135526397
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Entry
135526397 CDS
T10723
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
135526397 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
omm03000
]
135526397 (kdm2ab)
04121 Ubiquitin system [BR:
omm04121
]
135526397 (kdm2ab)
03036 Chromosome and associated proteins [BR:
omm03036
]
135526397 (kdm2ab)
Enzymes [BR:
omm01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
135526397 (kdm2ab)
Transcription factors [BR:
omm03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
135526397 (kdm2ab)
Ubiquitin system [BR:
omm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
135526397 (kdm2ab)
Chromosome and associated proteins [BR:
omm03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
135526397 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
135526397 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
SR-25
F-box
Cupin_8
DUF5386
New_glue
LRR_8
Motif
Other DBs
NCBI-GeneID:
135526397
NCBI-ProteinID:
XP_064810811
LinkDB
All DBs
Position
32:complement(62303463..62314992)
Genome browser
AA seq
1330 aa
AA seq
DB search
MEDQNPRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQSDRFNSYLVKHMDGKDF
TFEYIQREGLRDPIVFEKKDGLGLEMPDSDFSVSDVKLFVGSRRMVDVMDVTTQKGIEMS
MAQWRRYYETPPSERDKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNSIIEMQYPKVQKYCLMSVQGCFTDFHVDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKAQDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPDFQKHSLGVG
LTREDSENKLNGHVKNGTEEKKEGDNDKEEKEEESETKVKMEESDDDSFLLPGATKPGVR
VNLTPLELEGLWNLLGKLEELPTHKKCVPAGIRNAPALLHDIRALLEEHCNDDPKLSYTG
KPIVKWPKRPSWYQPPPPSVVYRPRLAMPHKAVVPRPAKPTSISALRRRRVRCKHCAACQ
RKECGECNFCKDMRRFGGPGRMKKGCMMRQCLAPGLPNSAVCALCGAGQGKQECSDESPS
STTLMECSNCAQIAHPDCIKVPGEGRINKDLPSCWECPKCYQGKEGSSSESSSSEDSTAS
TGSLSTSNHAHREGIGDGEAGSGVRKGRRGRPPLTSSLSQRRVPPPSQRLLLQQQQNRKR
AGALELRLRKRIKLERSKILQSKQTLSLERSPKLLCSQGLAHLQRGVSSRLRSPVGRLSR
GRGSFRGSPYRSPTGARLHPHQLSLSLAPAGRGEGNRERGSGRGVRLRGGAAGRGRRGQR
HGGAEEESDSSSSSSSSSTSSSSSSSSGSDEETENGVRARRNKENRPQRRGRGAAKEDEE
EEQSEESNQNGEEEMDEDGGEGGQAQTEPPVLVVSDLSDELMKGSYLTVTLQPSRAKRDP
GAIVPKLEAAVAPRPAPPGQSCIQRKNLARPPLRNHAPDPYAAPSLSDTHTRGSHPDERR
MRPGRPERTDNSASSSSPVPPLRLPLSALQDGGREVANGGSEPGCEREVWVSVFRYLTRA
ELCVCMAVCKNWHKWSLDKRLWMRVDLSVSKSISPQALSGIIKRQPVTLDLSWTSISKKQ
LTWLINRLPGLKDLMLSGCSWSSISALSSPGCPLLRTLDLRWADGIKDGQIRDLLNPPGC
DNRSQLRNMQSFRLAGLEISDSTLRLVIRHMPLLTRLDLSHCGALTDQSINLLTAVGSST
RNTLTELNLGGCSKLTDSCLRYLRRLSCLSLLDLRECKSVSRKACEAFISELSVNTLYCL
SEDKLIQRIS
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccaaaaccctcgttacagcaagcgcttgcgtacagggacgcggcggcgctac
caggatgacgggatctcggacgatgagattgaggggaagaggacgtttgacctggatgag
aagctgcagagtgacaggttcaactcttacctggttaaacacatggatggaaaagacttc
acattcgagtacatccagagggaggggctgagagaccctatcgtctttgagaaaaaagat
ggcctcggcttagagatgccagactctgatttcagtgtgagtgatgtcaagctgtttgta
ggcagtcggaggatggttgacgttatggatgtgaccactcagaagggcatcgagatgtcc
atggcccaatggcggcggtactacgagaccccgccctcggagcgagataagctctataac
gtcatcagcctggagttcagtcacaccaagctggagaacctggtgaaacgacccgcctcg
gtggatttgatagactgggtggacaacatgtggccaaggcacctaaaggagagacagaga
gactcaaccaactccataatagaaatgcagtatcccaaagtgcagaagtactgtctgatg
agtgttcagggctgcttcacagacttccacgttgactttggcggtacgtcagtctggtac
cacatcctgcgggggggaaaggtgttttggcttatcccgcccacaccccagaacttggag
ctgtatgagaactgggtgttgtcagggaaacagggagacattttcctcggggacaaggcc
caggactgtcagaggatagaactgaagcagggatacaccttcatgatcccctccggctgg
atccatgctgtgtacacccccgaggacacactggtgtttggaggaaacttcctccacagc
ttcaacatccccatgcagctcaacatctacaacattgaggaccgcacacgagtcccggct
aagttccgataccccttctactatgagatgtgctggtacgtgttggaaagatacctctac
tgcctgaccaacacctcccacctcacccccgacttccagaagcactcacttggtgttggt
ctgacccgtgaagactcggagaacaaactcaacggccatgtgaaaaatggcacagaggaa
aagaaagagggagacaatgataaggaagaaaaggaggaggaaagtgagaccaaggtcaaa
atggaagagtctgatgacgattccttcctccttcctggtgccactaagccgggggtgaga
gtaaacctgactcccctggagttggaggggctgtggaacctgctggggaagctggaggag
ctgccgacccacaaaaagtgtgtccccgcaggcatccgtaatgcccccgccctgctccat
gacatacgggctcttctggaggaacactgcaacgatgaccccaagctgtcttataccgga
aagcccattgtcaagtggcccaagaggccctcgtggtaccagccccctcccccctcagtg
gtataccgtcctcgtctcgccatgccccacaaggccgtggtcccgcgccctgccaagccc
acctctatctcggctctgaggcggaggcgcgtgcgctgcaaacactgtgcagcctgccag
aggaaggagtgcggcgaatgcaacttctgcaaagatatgaggaggttcggaggacccgga
cgtatgaagaagggctgcatgatgaggcagtgtcttgctcctggcctgcctaactcagcg
gtgtgtgctctgtgtggagcgggccaggggaaacaggagtgttcagacgaaagcccctcc
tccacaaccctcatggaatgctccaactgtgctcagatcgcccaccccgactgcatcaag
gttcctggggagggcaggatcaacaaggacctgcccagctgctgggagtgtcccaaatgt
taccagggcaaagaaggctcttcatcggagtcgtccagcagtgaggacagcacggcgtct
acaggttctctctctacgtcaaatcatgcccaccgagaggggataggagatggggaggca
ggcagtggggtgaggaagggacgacgtggcagaccccccctgacatcctctctgtcccag
cggagagtgccccctccctctcagaggctgttactgcagcaacaacaaaacaggaagaga
gccggagcgctggagcttcgactcaggaagaggatcaaactggagcgcagcaaaatctta
caatcgaagcagacgttgtctctggagcgttctcctaagctcctgtgctcccagggtcta
gcccacctccagagaggggtgtcctctcgcctccgctcccctgttggcagactgtcccgg
ggccgtgggtccttcagaggctccccttaccgctcccctacaggggctcgcctccacccc
caccaactctccctaagcctggcccctgcaggcaggggagaggggaacagggagcgaggg
agtgggagaggagtacggctcagaggaggagcagcagggagaggaagaagaggacagaga
cacggaggagcagaggaagagagtgatagcagcagtagtagcagcagcagcagcaccagc
agcagtagtagtagtagtagtggtagtgatgaggagacggagaatggcgtgcgggccaga
cggaacaaagagaaccgaccacagagacgaggaagaggagcagccaaagaagatgaggaa
gaggaacagagtgaggagtccaaccaaaacggagaagaagagatggatgaagacgggggg
gaaggaggacaggcacagacggagccaccagtcctcgtagtgtcggaccttagcgacgag
ctcatgaagggctcgtatctcacagtaaccctacagccgtcgagggccaaacgtgatccg
ggggccattgtcccgaaactggaggctgcagtcgccccccgccctgcccctcccggccag
agttgcatccaacgcaagaacctggcccgaccacccctcaggaaccacgccccagacccc
tacgctgcaccctcactctcagacacacacacacggggctcccatccagacgagaggaga
atgaggccaggcagaccagagagaacagacaacagcgcttcctcctcctctcctgttcct
cctctacgcctccctctgtcggctttacaggatggggggagggaagtggcgaatggaggg
agcgagccgggctgtgagagggaggtgtgggtttctgtcttccgttacctgactcgtgcc
gagctctgtgtctgcatggccgtctgcaagaactggcacaaatggagcttggataagagg
ctgtggatgcgggtcgatctgagcgtgtctaaatccatcagtcctcaagctctgtcaggt
atcatcaaacgccaaccagtcactctggacctctcctggacctccatctccaagaaacaa
ctcacctggctcatcaaccgcctgcctgggttgaaggatctcatgttgtctggctgttcc
tggtcttcaatttcggctcttagctcgcccggttgccccctcctgcgcacgctggacctt
cgatgggccgacgggatcaaagacggacagatcagggacctgctcaacccaccaggttgt
gataaccgcagtcagctgaggaacatgcagtctttccgtctggcggggctggagatcagt
gactctactctgaggctggtgatcagacacatgcccctgctgacccgtctggacctgtcc
cactgtggagccctcactgaccagtccatcaacctgctcactgctgtgggctcctccaca
cgcaacacactcaccgagctcaacctggggggctgcagtaagctgacagactcgtgtctg
cggtacctccgccggctttcctgcctctccctgctggacctgcgggaatgcaagagtgtg
tcccgcaaagcctgtgaggccttcatctctgagctgtctgtcaacaccctctactgccta
tctgaagacaaactgatccagaggatatcctag
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integrated database retrieval system
