Oncorhynchus masou masou (cherry salmon): 135526837
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Entry
135526837 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC135526837
KO
K16497
protocadherin gamma subfamily C
Organism
omm Oncorhynchus masou masou (cherry salmon)
Brite
Cell adhesion molecules [BR:
omm04515
]
Cadherins
Protocadherins
135526837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135526837
NCBI-ProteinID:
XP_064811583
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Position
32:complement(56616312..56625544)
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AA seq
1717 aa
AA seq
DB search
MTKRMGYRDWRWLALWWHHFFLLWSTIDGQTRYTISEELKQGYVVGNLAKDLGLGLSDFF
DRKLRVASEAGKQYFNVDAVKGELIVNERIDRETLCGQSASCVLPLQVVIENPLQLHRIE
VEIRDINDNSPSFLTKELTVKIVELTVAGARFPLESAEDPDVGSNSLKSYTISKDECFTL
KVKELGNGKKIPELVLEKPLDREKKSVHKLLLTALDGGNPVRSGTAEITITVLDVNDNFP
VFEKSVYKISIHENSAKGTFMIQLKATDIDEGQNGEINYSFGERTPESVLSTFNMDPDTG
DIFLKGXLDFERATTYDIDITARDEGAPEMEGHCRVQVEVIDVNDNSPEIVLTSQPNPVR
ENAPSGTVVALINARDLDSGNNGKVTLQLPRGYPFSLKPSYSNNYALVTSDVLDRESFSE
YNIEITATDSGSPPLTTKKTIPVTIIDVNDNPPKFSQPFYNVYLIENGLPGSMLSSVSAS
DLDFGDNAKISYSILESKAQDVSVSSYVYMNTDNGSIYSMHSFDYEKLKVFQILVQAKDH
GSPSLSSNATVHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGHLVTKVTAVDADS
GHNAWVSYKLVEATDTSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDDGEPVQSATV
TLTILVEDGLHELISDLRQKPPEPSKKSGRITLYLILSLASVSVLSLVTFIILAVKCVRN
SRSSGSCCMRQDDLDGYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCVSPMSE
FSDFTFVKPSSTTDFKEMINVLDASLPDSAWTFESQQVRIFLELYFNGSGMTKRMGYRDW
RWLALWWHHFFLLWSTIDGQTRYTISEELKQGSVVGNLAKDLGLGLSEFVDRKLRVASEA
GKQYFNVDAGKGELIVNERIDRETLCGQIASCVLPLQVVIENPLQLHRIEVEIRDINDNS
PSFLTKELTLKIAESTVAGARFPLESAEDPDVGSNSLKSYTTSKDECFTLKVKELGNGKK
IPELVLEKPLDREKKSVHNLLLTALDGGNPVRSGTAEITITVLDVNDNFPVFEKAVYKIS
IHENSAKGTFMIQLKATDIDEGQNGEINYSFGERTPESVLSTFNMDPDTGGIFLKGDLDF
ERATTYDIDITARDEGAPEMEGHCRVQVEVIDVNDNSPEIVLTSQPNPVRENAPSGTVVA
LINARDLDSGNNGKVTLQLPRGYPFSLKPSYSNNYALVTSDVLDRESFSEYNIEITATDS
GSPPLTTKKTIPVTIIDVNDNPPKFSQPFYNVYLIENGLPGSMLSSVSASDLDFGDNAKI
SYSILDSKAQDVSVSSYVYMNTDNGSIYSMHSFDYEKLKVFQILVQAKDHGSPSLSSNAT
VHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGHLVTKVTAVDADSGHNAWVSYKL
VEATDTSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDDGEPVQSATVTLTILVEDGL
HELISDLRQKPPEPSKKSGRITLYLILSLASVSVLSLVTFIILAVKCVRNSRSSGSCCMR
RDDLDGYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPMSEFSDFTFVKPS
STTDFKEMINVLDASLPDSAWTFESQQSSVIYKAQHFSTIVVDSDTLCSAFNTIVPSKLI
IKLEALGLSNALCYWVLDFLTGHPRMVKGANNMDKLK
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaatgggatacagagactggagatggctggctctttggtggcatcatttc
tttctcttgtggagtacaatagacggacagactcgctacaccatctccgaggaactgaaa
cagggctatgtggtaggaaatctagccaaagatctgggtttgggactatctgattttttt
gaccgtaaactgcgtgtcgcttctgaggctggtaagcagtatttcaatgtggatgcggtg
aagggcgagctgatcgtcaacgagagaatagacagagagacgttatgcggacaaagcgcc
agctgcgttttacctctgcaggttgtcattgaaaaccccttacagttgcaccgaattgag
gtggaaatacgagacataaatgacaattcgcctagttttcttacaaaggagctcacagtg
aaaatagtcgaattgactgttgcaggcgcgcgttttcctttggagagtgcagaggaccct
gacgtgggcagtaattcccttaaatcctatactattagtaaagatgagtgttttacgttg
aaggtaaaggagcttggtaatggaaagaaaataccagaactagttttagagaagccctta
gaccgagagaaaaaatctgtccataaactactgttaacagctctagatggaggcaatcct
gtcagatccgggacggcagagataactattactgtgcttgacgtaaacgataattttcca
gtatttgaaaagtctgtgtacaaaatttctatccacgaaaatagtgcaaaggggacattt
atgattcaacttaaagcgacagatattgacgagggtcaaaatggggagataaactattcg
tttggtgagcgcacccctgagtctgtgctttctacatttaatatggatccagacacaggg
gatatttttttgaaggggnatttagatttcgaaagagctacaacatatgacattgacatc
acggcgagagatgaaggcgctcctgaaatggaaggacactgtcgcgtgcaggtagaggta
atagacgttaacgacaattcgcctgaaattgtcctcacttcccaaccaaacccggtgcgc
gagaacgcgcccagtggcacggtagtagctttgatcaatgcccgggaccttgactccggt
aataacggtaaagtgacgttacagctcccacgaggttatccttttagtctgaaaccgtcc
tattctaataattacgcactggtcacaagtgatgttttagacagagagagtttctcagag
tataatattgagataacagccactgattcgggctcccctcccctgactaccaagaaaact
ataccagtcactatcattgatgtcaacgacaacccccctaaattctctcagcccttctat
aatgtatatttaatagagaatggactaccaggatccatgctatcttcagtatctgcatct
gacctggattttggagataatgccaagatctcctactccatcctagagtccaaagcgcag
gacgtttctgtgtcttcctatgtgtacatgaacactgataacggcagtatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattctggtgcaggccaaggaccac
ggctctccctctctgagcagcaacgccactgtccatgtttttatcctggaccagaatgac
aatgcccccgctgttatttacccctccgctgccctgggctcgctctctcaccagaagatg
ccccgctccgctaaagcaggccacctcgttactaaggtaacggccgtggacgcagactcg
ggccataacgcctgggtctcgtataaactggtggaggccacagacacgtctctgttcagt
gtcaatctttacacaggggaggtgaggactaaacgcgctgtgtccgagcaggacgactcc
tctcagaggctgcttatagagatacaggatgacggggagccggtccagtccgccacggtc
acactgaccatactggtagaggacgggctccacgaactcatctctgaccttcggcagaaa
ccgccagagcctagcaagaaaagcgggagaatcaccctgtatttgattctctcactggcc
tcggtgtccgtgctgtcgctggtgacttttatcatcttagcagtcaagtgcgttagaaac
agcaggagcagcggtagttgctgcatgagacaggacgacttggacggctacaagaacccc
aacagaaacctgcagattcagctcaacactgacgggccgattaagtacgtggaggtcctg
ggaggggacatgttgtctcagagtcagtccttcaggtcatgtgtctctcccatgtcagag
tttagtgatttcaccttcgttaagcccagcagcaccactgactttaaggagatgatcaac
gtcctagacgcgtctttacccgacagcgcctggacctttgagagccagcaggtgagaata
tttttggaattgtattttaacggatcagggatgacaaagagaatgggatacagagactgg
agatggctggctctttggtggcatcatttctttctcttgtggagtacaatagacggacag
actcgctacaccatctcggaggaactgaaacagggctctgtggtaggaaatctagccaaa
gatctgggtttgggactatctgagtttgttgaccgtaagctgcgtgtcgcttctgaggct
ggtaagcagtatttcaatgtggatgcggggaagggcgagctgatcgtcaatgagagaatt
gacagagagacgttatgcggacaaatcgccagctgcgttttacctctgcaggttgtcatt
gaaaaccccttacagttacaccgtattgaggtggaaatacgagacataaatgacaattca
cctagttttcttacaaaggagctcacattgaaaatagcagaatcgacagttgcgggcgca
cgttttcctttggagagtgcagaggaccctgacgtgggcagtaattcccttaaatcctat
actactagtaaagatgagtgttttacgttgaaggtaaaggagcttggtaatggaaagaaa
ataccagaactagttttagagaagcccttagaccgagaaaaaaaatctgtccataatcta
ctgttaacagctctagatggaggcaatcctgtcagatccgggacggcagagataactatt
actgtgcttgacgtaaacgataattttccagtatttgaaaaggctgtgtacaaaatttct
atccacgaaaatagtgcaaaggggacatttatgattcaacttaaagcgacagatattgac
gagggtcaaaatggggagataaactattcgtttggtgagcgcacccctgagtctgtgctt
tctacatttaatatggatccagacacagggggtatttttttgaagggggatttagatttc
gaaagagctacaacatatgacattgacatcacggcgagagatgaaggcgctcctgaaatg
gaaggacactgtcgcgtgcaggtagaggtaatagacgttaacgacaattcgcctgaaatt
gtcctcacttcccaaccaaacccggtgcgcgagaacgcgcccagtggcacggtagtagct
ttgatcaatgcccgggaccttgactccggtaataacggtaaagtgacgttacagctccca
cgaggttatccttttagtctgaaaccgtcctattctaataattacgcactggtcacaagt
gatgttttagacagagagagtttctcagagtataatattgagataacagccactgattcg
ggctcccctcccctgactaccaagaaaactataccagtcactatcattgatgtcaacgac
aacccccctaaattctctcagcccttctataatgtatatttaatagagaatggactacca
ggatccatgctatcctcagtatctgcatctgacctggatttcggggataatgccaagatc
tcctactccatcctagactccaaagcgcaggacgtttctgtgtcttcctatgtgtacatg
aacactgataacggcagtatctacagcatgcactcgtttgactatgagaaactgaaggtg
tttcagattctggtgcaggccaaggaccacggctctccctctctgagcagcaacgccact
gtccatgtttttatcctggaccagaatgacaatgcccccgctgttatttacccctccgct
gccctgggctcgctctctcaccagaagatgccccgctccgctaaagcaggccacctcgtt
actaaggtaacggccgtggacgcagactcgggccataacgcctgggtctcgtataaactg
gtggaggccacagacacgtctctgttcagtgtcaatctttacacaggggaggtgaggact
aaacgcgctgtgtccgagcaggacgactcctctcagaggctgcttatagagatacaggat
gacggggagccggtccagtccgccacggtcacactgaccatactggtagaggacgggctc
cacgaactcatctctgaccttcggcagaaaccgccagagcctagcaagaaaagcgggaga
atcaccctgtatttgattctctcactggcctcggtgtccgtgctgtcgctggtgactttt
atcatcttagcagtcaagtgcgttagaaacagcaggagcagcggtagttgctgcatgaga
cgggacgacttggacggctacaagaaccccaacagaaacctgcagattcagctcaacact
gacgggccgattaagtacgtggaggtcctgggaggggacatgttgtctcagagtcagtcc
ttcaggtcatgtctctctcccatgtcagagttcagtgatttcaccttcgttaagcccagc
agcaccactgactttaaggagatgatcaacgtcctagacgcgtctttacctgacagcgcc
tggacctttgagagccagcagtcatccgttatctacaaggctcagcatttcagcaccatt
gttgtggacagcgacactctctgctcagcattcaacaccatagtaccctccaagctcatc
attaagcttgaggccctgggtctcagcaatgccctgtgctattgggtcctggacttcctg
acgggccacccccggatggtgaagggagcaaacaacatggacaaactgaaatag
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