Oncorhynchus masou masou (cherry salmon): 135540283
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Entry
135540283 CDS
T10723
Name
(RefSeq) TAR DNA-binding protein 43-like
KO
K23600
TAR DNA-binding protein 43
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135540283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135540283
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
135540283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
OB_RNB
Adenine_deam_C
Motif
Other DBs
NCBI-GeneID:
135540283
NCBI-ProteinID:
XP_064822916
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Position
5:76731412..76734554
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AA seq
406 aa
AA seq
DB search
MAEVYIRVAEEENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRFRSPVSQCMRGVRLVEG
ILHAPENGWGNLVYVVNYPKDNKRKMDEIDASSAVKMKRGDMKTSDLIVLGLPWKTSEQD
LKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQDKVISQRHMIDGRWCDCKLPN
SKQGPDEPMRSRKVFVGRCTEDISADELRQFFMQYGEVTDVFIPKPFRAFAFVSFADDQV
ASSLCGEDLIIKGVSVHISNAEPKHGSRQMMERAGRFGNGFGAQGFGSNRTGLGSSAGSN
MANFGNFSLNPAMMAAAQAALQSSWGMMGMLASQQGQTATSGATSTGQTSSTRDQSQAYS
TGNSNYGASSASLGWGTGSNSTTSGSGFSSGGFGSSMESKSSGWGM
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggtgtacattcgcgtggccgaagaagagaatgaggagcccatggagatccca
tccgaggatgatggcacagtgttgctctctactgttgcagctcagtttccaggggcctgc
ggcctacgattcaggagtccagtttcgcagtgcatgcgaggggtccgtttggtggaaggg
attcttcatgcacctgaaaacggctggggcaatttggtctatgtcgttaattatcccaaa
gacaacaaaaggaaaatggacgagattgatgcctcctcggctgtaaagatgaagaggggt
gacatgaagacttcagacctgattgtactggggttgccatggaagacatctgaacaggac
ctgaaagattacttcagcacctttggggaagtcatcatggtacaggtgaaacgagatgtg
aagactggaaactcaaagggatttggctttgtgaggtttactgagtatgaaactcaagat
aaagtgatctctcaacgccacatgattgatggaagatggtgtgactgcaaactccccaac
tccaagcaaggtccagatgagcccatgagaagcaggaaagtgtttgtaggccgttgcact
gaagacatttccgctgatgagctgcgccagttcttcatgcagtatggcgaggtcactgat
gtcttcattcccaaaccctttcgtgcctttgccttcgtcagctttgccgatgaccaggtt
gccagttccctatgtggagaggacctgattattaagggggtcagcgtgcacatctcaaac
gctgagccaaagcacggcagtaggcagatgatggagcgagcagggcggtttggaaatggg
tttggggctcagggctttggtagtaaccgcacaggtttagggagcagtgccgggagtaat
atggctaattttggcaactttagtctgaaccctgccatgatggctgctgctcaagctgcc
ctgcagagcagttggggaatgatgggtatgttggctagtcaacaagggcagactgccacc
tcaggcgccacctctactgggcagactagctccaccagggatcagagccaggcctacagt
acaggcaacagtaactacggagccagctcagccagtctaggttggggtaccggttctaat
tcaacaaccagtggtagtgggtttagctcaggaggatttggctccagtatggagtccaag
tcttcagggtggggtatgtaa
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