Oncorhynchus masou masou (cherry salmon): 135542438
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Entry
135542438 CDS
T10723
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03450
Non-homologous end-joining
Brite
Enzymes [BR:
omm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135542438 (lig4)
DNA repair and recombination proteins [BR:
omm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
135542438 (lig4)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
135542438
NCBI-ProteinID:
XP_064825454
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Position
6:64573533..64577891
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AA seq
922 aa
AA seq
DB search
MEGTSKSEAAAPQSSVAAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSW
RKFHAALHKDNPTTTDSFYPAMRLIVPSFERERVAYGIKESMLAKLYIDVLGLPKNGPEA
NKLLNYRTPTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDL
VKKSLLHLITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCR
QLHDPFVSLSEVSIGLFFAFKPMLAAMANMRQVEKQMGNSTFFLETKLDGERIQLHKDGD
VYKYFTRNSFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKG
SKFDIKRLVDDSELQTCFCVFDVLLVNDHKFGNEPLKVRHDNLQTVFTPVKGRIHVVPKT
EAKTMQEVVNAINEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLI
VGGYWGKGRRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHW
KVYRKNDPPASILCGTERPEVYIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIRE
DKEWHQCMTLAELDQFRNKASGKLFSRHFRINDNDEPEKKKRKSPAAAKPKKAVGVIDHF
KSQDLSGVTKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAV
ENMRVKNLISSDQHDVVWAAWLLACLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDS
YFVDTDEQQLREVFGRIGRVDTLTAQCIAKLEERFSWDDLPTSMFRPFRVYMDRYADIGD
PKSIVPANFLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIV
RESWVTESIKAGFLRNDNDYLV
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaagctgctgctccccagagctctgtcgctgctgctccc
cagagctctgtcgctgctcaagttccatttcttcacctgtgcaccacgcttgaaaaaata
cagaagaccaaactccgaccagacaaatcaaagtttctccgtgacttcatagactcctgg
aggaagttccatgcggccctccacaaagacaaccctaccaccacagactctttctacccg
gccatgcgtctcatagtcccctcgttcgaaagggagcgtgtggcctatggcattaaagag
agtatgttagccaagctctacatagacgtcttgggtctccccaagaatggaccggaagcc
aacaaactgttgaattaccgcacccccaccacatctcagggggaggcgggagacttcgct
cttatgacctactttgtgttgaagaaacgctgcacaagccagggaaacctcaccatcaga
gaagtcaacgactttctggactcggtggccatcaacaatgctggtaagcagaaggacctg
gtgaagaagagcctgctgcaccttatcacccagagcacggcactggagcagaagtggctt
atccgcatgatcctgaaggacatgaagctgggggtcagcaaagagaccgtgctccaggtg
ttccacttagatgcggccgagctctacaacgtcaccacagacctaaacaaggtgtgccgg
cagctccacgacccctttgtgtccctcagcgaagtgtccattggcctgttctttgccttc
aaacctatgctggccgccatggccaacatgcgccaggtggagaagcagatgggcaacagc
accttcttcctagagaccaagctggatggagagcgcatccagctgcacaaggatggcgac
gtctacaagtacttcacacggaactccttcgagtacacccagcagtttggtgcatcgccg
ctagagggctccctgacgcctttcatccacaatgtcttcaagccccacgtagtcaaatgc
atcctggatggggagatgatggcgtacaaccccactaccgacaccttcatgcaaaaagga
agcaagtttgacatcaagaggctagtggatgactccgagctgcagacgtgcttttgcgtt
ttcgatgtacttcttgtgaacgaccacaagtttggcaacgagccgttgaaggtgcgccac
gacaaccttcagactgtcttcactcctgttaaagggaggatacacgtggtgccgaaaacg
gaggccaaaactatgcaagaggtggtaaacgccatcaacgaagccattgacaacagggaa
gagggcatcatggtgaaagatccctcatccgtctacaagcccgataagcgaggtgagggc
tggctcaagataaagccggagtacgttgatggcttgatggatgagctcgacctgttgatt
gtcggaggctactggggaaaaggaaggcgaggtggcatgatgtctcatttcctcgtcgcg
gtggccgaagctccgaagcctggagagaaaccctccgttttccacacgctctgtcgcatc
ggttccggctacaccatgaaggagttgtatgacttggggttgaagctggccaagcactgg
aaagtctaccggaagaacgaccctccggcctctattctgtgtgggacggagagaccggaa
gtctacattgacccgtgcaactcggtcatcatccaggtgaaggcagcagaaatagtcagt
agtgagatgtacaaaaccaactgcacactacgcttccccaggatcgagaagatccgggag
gacaaagagtggcaccagtgcatgacccttgctgagctcgatcagtttcgcaacaaggcg
tccgggaagttgttctcgcgccacttccgcatcaatgacaatgacgaaccagaaaagaag
aagcgcaagtcgccggcagcggccaagcccaagaaagctgtcggcgtcatcgaccacttc
aagtcccaggacctatctggtgttaccaaggagacggacatgttcgaggacgtggagttc
tgcgttatgaatggcaatgaggcgcaccccaaggcggagctggagaaagcagtggcccga
tgtggcggtattgtagtccagaacccgggaccagacacctactgtgtgatcgccgctgtg
gagaacatgcgtgtgaagaacctgatctcttcagaccagcacgacgtagtgtgggctgcc
tggctgctggcgtgcctagacaggaagcaggtggtgccatggcaaccgcgtcacatgata
cacatttcaccctccaccaaggagcactttgcaaaggaatatgactgctacggagacagc
tactttgtggacacggacgagcagcagctgagggaagtcttcggtcggattggtagagtg
gacactttgacggcacagtgcatcgctaagttggaggaacgcttcagctgggacgacctc
cccactagcatgttcagacctttcagggtctacatggacagatacgcagacataggagac
cctaaaagcatcgtaccagcaaattttctggacacgcgggctctggaattccgcttccac
ggagggacagtagtgcagaagcttgaggaaggggtctctcatgtcatagtggtggaggaa
acaagagtgttggctttaagaaccctcagacgactctttaccaaaaagtttaagattgtt
agagagtcatgggtaacagaatctatcaaagcagggtttttgcggaatgacaatgactac
ctagtgtaa
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