Oncorhynchus masou masou (cherry salmon): 135544005
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Entry
135544005 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor TIAM1-like
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm04530
Tight junction
omm04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
135544005
09142 Cell motility
04810 Regulation of actin cytoskeleton
135544005
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
omm04990
]
135544005
Domain-containing proteins not elsewhere classified [BR:
omm04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
135544005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PDZ
PH_9
SOS1_NGEF_PH
PDZ_6
PH_11
Motif
Other DBs
NCBI-GeneID:
135544005
NCBI-ProteinID:
XP_064827400
LinkDB
All DBs
Position
8:complement(4293593..4470414)
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AA seq
1782 aa
AA seq
DB search
MGNVESQNGDSGFYGNEKGHLSRKHTSRSLRLSTKHQQQNPSRRSLRPSAGKSEHRNSEA
STRSSSTPSIPQSLVENGLEPFSQTDELGEFGINPHWTDRVAMTMRPSESFPHDDDDDLT
GDPSLATPTPETSEVDTIALEREGAEEEGAATYPVERDDRERETDGEVRYLQRVNEGPRE
EGSCQKKRSKSADMWRDDSQEFSLSDLSQDHLTSTEEIIDGGEEEEGEEEEEEEEEERAS
SRGTAGSAERASSLDHLCSERSQTVLRGTHNRYAKNHRDGELTAHRGRDGEGDEGLTSPQ
EEEGSGYGAFTLPCRRSHCLSEGLSGHQVVPCPTFQGRRAQTTQDISGVLGEGSEYGDSG
IDGVATETDGEVGPGSRRRCKAMSASFSVYSAAGSSAFNGSDSGSSSGGGEGGGGGRGEG
GGGGRGGEGGGRGGGRKGGWEMYENFHQDFENQHWTRRERDCAEEAGSAESDERSSGTLS
TAYPSDALIGCCAQGTVRKAGALAVKNFLVHKKNKKVEAATKRKWKHYWVCLKGCTLFLY
ETDGRSGIDHHSVPKHAVWAENSILQAVPEHPKKDFVFCLSNSLGDAFLFQTSGQTELEN
WITAIHSACAAAVARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLSAVTDNKKR
KTILEQIFLWEQNLEQFHLDMFRCRCYLASLQGGELPNPKRLLAVASRATKQAMGRLGIF
SVSSFHALVAVRTESAVRKRSQAMPRPSSKRRSRFSSLWGLDTTSKKKVKGRPSINQVFV
AGXEPVTKPMERMFEDTASEKSKEEGSLKMIPQDSVDSEIWVPDYLAPSWVCLPNDQPVL
VVIQPGETAEDTLDAVCKAHKLDPSNFYLRLKVCVEDQLLLYVPKMEEDISDLLYKEIEI
CPKTTKLIRFDKAESCTLGYGFSIAVVDEEGTQQLHITEVNTGGLASAKGLHAGDEILLL
NGKPASALGVVDMRSALVGPSLSLSVSTLPTLVPRDLCPFPPRRSNTAEYDPCTDIYSQS
QEDILDEVSGLTVVSPDDTLEDESVLDLENSGHNQADYTEPGQKSTEQVTAYCRSLHEMN
PSHVSPPSSSSCSSSLSPSQAMPVAGIAIQRQLSHADKLRKVISELVETERTYVKDLGCL
IERYLTPLQKERFLTQDELDVLFGNLGEMLQFQVEFLKTLEDGTRLVADLDELERVEQFK
KVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAKTDADFKAFLAERNPKQQHSSTL
ESYLIKPIQRILKYPLLLRELYSLTDPDSEEHYHLNVAMKAMNKVASHINEMQKLHEEYG
AVFDQLINETTADRKEVSDLSMGDLLLHSTLVWINPPASLVKGKKDPELATFVFKTAVVF
VYRDRSKQRKKLGASHRPAVSDDRVPFLFRHMISTDSLQVRALTNSEGTAVCEIVHVRSE
SEGRPERTFHLCCSSVDSKKDFLKTVHSILRDKQRRQLMKTESLPLNQQYVPFGGKRLSN
LKGNRPAMNRAVSAPSRTLGRRKLVRNRFTIDTDLVLHDNLEDSNPTHSTHDHSHQPTHS
HQPPHSHQPPHSHQPPHSHNPLLPTQTPQQQTLLATGGDTDRWVEEQFDLGCYDDQGVVT
GERRMEGGIEGRMEVKETDILSDDDEYCKSVRASSTEPSLLEERMEGATLEERSQDQDRG
VDEEEEEGKKEVEEERRSSQGILQEDERGERGESQVDSVSPAPPPSRSPAPPVKLTPLRK
QWAAEGVAGKQCSVEGVAKRDHCDVIWVRREDYANGGNNDVF
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgtggaaagtcagaatggtgacagcggtttctacggaaacgagaaaggtcac
ctgtcccgaaagcacacgtcccgatccctccgcctctctaccaagcatcagcagcagaat
cccagtcgacgctccctacgaccctcggcaggaaagtcggaacaccgcaattccgaagcc
agcacccgctcttccagcacgcccagtatcccacaatccttagtggagaacggcctggaa
ccttttagccagacagacgagctgggggagtttggaatcaaccctcattggactgaccgc
gtcgccatgacgatgaggccttccgagtccttcccgcacgacgacgacgacgacctcacc
ggtgacccctctttagccacgcccactccggaaacctccgaggtggacacgatcgctctg
gaacgcgaaggagctgaggaagaaggagcggcgacgtacccggtagaaagggacgacagg
gagagagagacggacggagaggtgcggtacctccagagggtgaacgagggaccgagggaa
gaaggaagttgtcagaagaagaggtcgaagtcagcggacatgtggagagacgacagtcag
gagttctctctgtccgatctcagccaggaccacctcacctccaccgaagagattatagat
ggaggagaggaagaggagggggaagaggaagaggaggaagaggaggaagagagagccagt
tccagaggaacagcaggttctgcagagagagcctcatcactagaccacctgtgtagcgag
cgcagccagacggttctacgaggaacacataaccgctatgccaagaaccaccgggacggg
gaactcaccgcccacagaggaagggatggagagggggatgaagggctgacctcgccccag
gaggaggagggaagcgggtatggggcctttacgctgccctgtcggaggtcccactgtctg
tctgaaggtctgtcaggacaccaggtggtaccatgtccgaccttccagggtcgaagggca
cagacgacacaggacatatcgggcgtgctgggagagggcagtgagtacggcgatagcggc
atcgacggggttgccacggagacggacggggaagtggggccggggtcacggcggcgctgt
aaggctatgtcagcctcgttctccgtctactctgctgccgggagcagcgcgtttaacggg
agtgacagcgggagcagcagtggaggaggagagggaggaggaggaggaagaggagaggga
ggaggaggaggaagaggaggagagggaggaggaagaggaggggggagaaaaggaggatgg
gaaatgtatgagaacttccatcaggactttgagaatcaacactggactcgtcgagaacgt
gactgcgcggaggaagcgggctcagctgagagtgacgagcgtagcagcggcacactaagc
acggcttacccatcagacgctctcattggctgctgtgcgcagggcacggtgaggaaggcg
ggagctctggcagtgaagaacttcctggttcacaagaagaacaagaaggtggaggcagcc
accaagaggaagtggaaacattactgggtttgtctcaaaggatgcactctgttcctgtac
gagactgacgggcggtcggggatcgaccatcatagtgttccgaaacacgcggtgtgggct
gagaacagtatccttcaggccgtacctgaacaccccaagaaggacttcgtcttctgcctc
agcaactctctaggggatgcatttctcttccagacgtcgggccagacggaactggagaat
tggatcacggcgatccactcagcgtgcgctgctgccgttgctaggcaacatcaccgggag
gatacggtgcgattgctaaggacagagatcaggaaactggagcagaagatagacatggac
gagaagatgaagaagatgggagatatgcagctgtctgcggtgacagataacaagaagaga
aagactattctggaacagatcttcctgtgggagcagaatctagagcagttccacttggac
atgttcagatgtcgttgttacctggccagtctgcagggaggggagctgcccaaccctaaa
cgcctgctagccgtggcctccagagccaccaaacaggccatgggacgcctgggaatcttc
tctgtgtcttcctttcatgcgctggtggcggtgcgaacagagagcgcggtgaggaagcgg
tcccaggctatgccccgcccctctagtaaacgccggagtcgcttctcttccctctggggg
ctggacaccacatctaagaagaaggtcaaaggtcgtcccagcatcaaccaggtgtttgtt
gctgggngggaaccagtgaccaaaccaatggagagaatgtttgaagatacggccagtgag
aaatcgaaggaggagggttcattgaaaatgattccccaggacagcgtggacagtgagatt
tgggttcctgactacctggccccatcctgggtgtgtctacctaacgaccagcctgtgctt
gtcgtcattcaaccaggggagactgcagaagatacgctggacgctgtctgcaaggcccat
aaactggacccgtctaacttctacctgcgtctgaaggtgtgtgtagaggatcagctgctg
ctatatgttcccaaaatggaagaagacatctctgatctgctctacaaagagattgaaata
tgtcccaaaaccaccaagctgatccgcttcgacaaagctgagtcctgcacgttgggatac
ggtttctccatagcagtagtcgacgaggaggggactcagcagctccatatcactgaagta
aacacaggaggactggcttctgctaaaggcctgcatgcgggtgatgagatcctgttgtta
aatggtaaaccggcgtcggctctgggcgtggtggatatgaggtcagcgttagtcggcccc
tcgttgtccctgagcgtgagcaccctgccgacccttgtcccccgcgacctctgtcctttt
ccccctcgacgctccaacacagcagaatacgacccttgtacagacatctattcacagagc
caagaggacattctggatgaggtatcagggttgacggtggtcagtccagatgatacttta
gaggatgagtcagttctggatctggagaattcaggacacaaccaggcggactacactgag
ccaggacagaagagtactgagcaggtgactgcatactgccggagtctccatgagatgaat
ccttcccatgtttccccaccgtcttcctcgtcctgctcttcctccctctctcccagccaa
gcgatgccagtggcgggcattgccatccagagacagctgtcacacgccgacaaactacgt
aaagtcatcagtgaactggtggagactgagaggacctacgtcaaggacctgggctgtttg
atagagcgttacctaactcctctgcagaaggaaagattcctcacccaggatgagctcgat
gtcctgttcggtaacctaggagagatgctgcagttccaggttgagttcctgaagactcta
gaagatgggaccagactggtagccgacctggacgagctggagagagtagaacagtttaag
aaagtgctgttctctctgggtggatcgttcctgtactacgccgaccgctttaagatctac
agcgctttctgtgccagccacaccaaggtgcccaaggtcctggccaaagctaagaccgat
gcagacttcaaggcgttcctggcagagaggaacccgaaacaacaacactcctcaaccctg
gagtcctacctgatcaaacccatccagaggatcctgaagtacccactactactgagagag
ctgtactcactgacggaccctgatagtgaagaacactatcacctgaatgttgcgatgaag
gccatgaacaaggtggccagtcacatcaatgagatgcagaaacttcatgaggaatacggg
gccgtgtttgaccagctcatcaacgagacgaccgccgaccggaaggaggtatccgatcta
tccatgggagatcttctcctccactccaccctggtgtggatcaatcctccagcctccctg
gtcaaaggcaaaaaggaccctgagctggcgaccttcgtgttcaagactgcggtggtcttt
gtgtacagagatcgctccaagcagaggaagaagcttggcgcgtctcatcgtcctgctgtg
tcagatgacagagtcccgttccttttccgtcacatgatctcaacagactccctacaagtc
cgcgccctcacaaactcagagggtacagcggtgtgtgagatagttcacgtgaggtcagag
tctgaggggagaccagagagaacctttcacctgtgctgcagttctgtggacagtaagaag
gacttcttgaagacagtccactccatcctgagagataaacaacgacgtcagctgatgaag
acagagtctctacccctcaaccagcagtatgtccccttcggaggaaaacgcctctctaac
ctcaagggaaacagaccggccatgaacagagcagtctcagcaccgtctcggacccttggt
cgcaggaagctggttaggaaccgattcaccattgacaccgacctcgttctccatgacaac
ctcgaagactctaaccccacccactctacccatgaccattcccaccagcctacacattcg
caccagcctccacattcgcaccagcctccacattcccaccagcctccacattcccataac
cccctgcttcctacccagacgcctcagcagcaaacgctgttggcgactggaggcgacacg
gaccgctgggtggaagaacagttcgacctgggttgctacgacgaccagggagtagtgacg
ggggagaggaggatggagggagggatagagggaaggatggaggtgaaagagacggacatt
ctgagcgacgacgacgagtactgcaagtcagtcagggcttcatcaaccgaacccagcctc
ctggaagagaggatggagggagcgactctagaagaaaggagccaagaccaggacagaggg
gtagacgaggaggaggaggagggaaagaaagaggtagaagaagagaggaggagctcccag
ggcattctccaagaggacgagaggggtgaaaggggagagtcacaggtagactctgtctcc
cccgcccctcccccctcacggtcccctgcccccccggtgaagcttaccccgctcaggaag
caatgggctgcagagggcgtggccgggaagcagtgttccgtggagggagtggccaagagg
gaccactgtgatgtcatctgggtgcgacgcgaagactacgccaacggagggaacaacgac
gtcttctga
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integrated database retrieval system
