Oncorhynchus masou masou (cherry salmon): 135551072
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Entry
135551072 CDS
T10723
Name
(RefSeq) LOW QUALITY PROTEIN: telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
omm Oncorhynchus masou masou (cherry salmon)
Pathway
omm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135551072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omm03019
]
135551072
03032 DNA replication proteins [BR:
omm03032
]
135551072
Messenger RNA biogenesis [BR:
omm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135551072
mRNA cycle factors
Common to processing body (P body) and stress granule
135551072
DNA replication proteins [BR:
omm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
135551072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
135551072
NCBI-ProteinID:
XP_064838536
LinkDB
All DBs
Position
12:complement(92319037..92374877)
Genome browser
AA seq
1696 aa
AA seq
DB search
MADELDRVRISAAELRAEASTLTNHHDDCHREERGEEGRGQRQQRHHGNDPSKRPDLQRY
MPGVGHGNRHHDSEDGGVVISPGDPLAMTSDPEVELVMSWPQEEGEEGHNMAATETVSTE
PGCVDGEMGKGGGEKCGGGFTSNRGGCSRAPAQQRTRRGDHHTTRADNNNNNSSSSSAKG
PSGSANRPQNSRQRDEVRGKNHRGGEPSGRSPGSPKATRKTRKPDREIYQPGGRRSTTTT
TQGEEGRETEKPAPDPPDPVREESQARREPVVWRETEEDGRGGEETGRRQGRRETGKAAV
LDHGVENLTGKIQTLCVTAPPEREEEGKGGEGEEGVGRRKKASGEGRRSRAGGGGKGRVG
GGNEGCEKTEEEKKKRERGNRRNRGGGEKGGNQDSRRRGGGGEGERGMTERDRRASEEDG
EREANRPADAQPAKGREKRRDRDTERDNQRGNNRPQPLPSDINREKNGEKDGNVEMQRNR
DRSERCRANTNNHRHSSSSSKHSSKSNIRRPRIRTYSTSSASSGASLDGLGQGEDRREDR
ARRDRLGHRERDGGEGGGGQLPNRRRNTRDSSTDSLEERRRDGGEEYLSPLWRRGEEESR
GGEDRGGGRGGLLKESQSDRQSGTSLATSGPSDDPQGRLRQGTVPRGKERGILILPAHTD
LSNSPTEPGPRLLFGGIRGGKEAGLGRGGRGGGTRRLWDPNNPDQKPALRLSQHASLQQQ
QPMYLQTGGGYGALHFLDTDDEAAGSPPVRQGEHFYPQQEAAAMAQAFYKYQNSDNPYPY
NANPNARYPYPYHTMPTTPYQMPSSNGIYPAQFYGEYRGQGYQTGAGAGLTPEEVEQQAR
GELGRQLRAADSQELQLSNLLSRDRLSADGLDRMAQLRADLLTLYERVILTDIEFSDSQN
LDQALWKNVFYQVIERFRQLLKDPSGDSTLRITPMLLTLLDEGTVFFDALLQKLQTVFQF
KLEDYMDGMAMXPLRKTVKYALISAQRCLICQGDIARYREQASDSANYGKARSWYLKAQQ
IAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRKADQM
ERRRKQESEGGSRGPGVRGGGRGEEGARVEIWVGPIGQAGVPSSHRGGSESSRDSEQEGE
LGNLSPSDLNKRFTLSFLHAHGKLFTKVGMESFPSVASRVLQEFTVLLQHSPSPLGSTRM
LQIITINMFTIHNAQSRGGDSEVRSVLQEQTTALGLAMFSLLVQRCTELLRDTPAEPIPE
EEREDGQEGMVRVSAFPLDLRELLPSVKVWSDWMLGHPNQWNPPPCRIDCSLDVWRSLAD
LCNALARVDHGEAPLYKADGDGGEGDEELRLLLLEEDRLLAGFVPLLAAPQEPCYVDCTG
DTAIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSMATSPQPGLPGDARSRQDSQTE
RGSDDVIVEAESSVSDGDDGSEDDIRELRARRSALTNKLAEQQRRRDKIQAVLQTCGQLE
LEVRPLFLVPDTNGFIDHLTGLKTLLQAGTYIVVVPLIVITELDGLAKGQENCDGSGSGR
GGSGCRGNSGGGGPTHARSVQEKAKVAVAFLERGFEAREPCLRALTSRGSQLESIAFRSE
DTSGQQGNNDDVILSCCLHYCKDEAKSLMPAQTNGPVRLRREVVLLTDDRNLRVKALTRN
VPVRDIPAFLTWAKVG
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaactagaccgagttcggatttcagctgcggagctgcgagctgaagcgtcg
actttgaccaaccatcacgacgattgtcacagagaggagcgaggagaggagggacgtggc
caacgacagcagcgtcaccacggcaacgacccgtcaaaacgccctgacctgcagcgctac
atgcccggggttggccacggcaaccgtcaccatgacagcgaggacggcggcgtagtcatc
tcccccggagacccgttagccatgacttctgaccctgaggtggaactggtgatgtcatgg
ccacaggaagagggagaagaaggacacaacatggccgccactgagaccgtttcaactgaa
cctggatgtgtagatggagagatggggaaaggaggaggagagaaatgtggaggaggtttt
acttcaaaccggggtggatgctctcgagcgcctgcacaacagaggactcgaagaggtgac
caccacaccaccagagcagacaacaacaacaacaacagtagtagcagtagtgcaaaggga
ccgtcaggctcagctaaccgaccacagaactccagacagagggatgaggtgagagggaag
aaccacaggggtggagaaccatcagggcgttcccctggctctcccaaagccaccaggaag
acccgtaaacctgaccgagagatctaccagcctgggggtcggaggagcaccaccaccacc
acccagggggaagagggaagagagacagagaaacctgcccctgatccccctgatcctgtc
agagaggaaagccaagccaggagggaaccagtcgtatggagagagacagaggaagatggc
agagggggtgaagagacaggcagaaggcaggggaggagagaaacaggaaaagcagccgtc
ttagaccatggagtagagaacctgactgggaagatacagacactctgtgtgactgcccca
cctgagagagaagaggaggggaagggaggagagggtgaggaaggagtaggcaggaggaag
aaggcaagcggtgagggcaggaggagcagagctggaggcggaggcaagggacgagtagga
ggaggaaatgaaggatgcgagaagactgaggaggagaagaagaagagagagaggggaaac
cgcaggaacagaggagggggggagaaaggagggaatcaggactccaggagaagaggagga
ggaggagagggtgagcgagggatgaccgagagagacaggagagcgtcggaagaagatgga
gagagggaagcgaaccgtcctgcagatgcacagccagcaaagggaagagaaaaacggagg
gatagagatacagagagagacaaccagagaggcaacaacagaccccaacctctaccctca
gatataaacagagagaagaatggagagaaagacgggaatgtagagatgcagagaaacaga
gataggagtgagagatgcagggctaacactaacaaccaccgccactcgtcatcttcctct
aagcacagctccaagtcaaacatcagaagacccaggattcgcacctacagcaccagttct
gccagcagtggcgccagcctggacggactgggacaaggggaggatcggagggaggacagg
gcccgacgagaccgactggggcacagggagagagacggaggagagggaggaggaggtcag
ctaccaaacaggaggagaaacactcgagactcctcaacagactcactggaggagaggagg
cgagatggaggagaggagtacttgagccccctgtggaggagaggggaggaggagagcaga
gggggagaggacagagggggggggagaggagggctcctgaaagagtctcagagcgacaga
cagtcaggtacctccctcgccacctcaggccccagcgatgacccccaggggcgcctcagg
cagggcactgtgcctcgtggtaaggagaggggcattctcatcctccccgcccacactgac
ctctccaattcgccgacggagcccgggccaaggctcctgtttggtgggattcgtggagga
aaagaggcgggactagggagaggaggaaggggcggaggaacaaggcggctctgggatccc
aacaaccccgaccagaaacccgctctccggctctcccagcatgcctctctccagcagcag
cagcccatgtacctgcagacgggcggcggttacggagcgctgcacttcctggatacggac
gacgaggctgcagggagtcccccggtccgccagggggagcacttctacccccagcaggag
gccgcagccatggcccaggccttctacaagtaccagaactctgacaacccttacccttac
aacgccaaccctaatgcacgttacccgtacccctaccacactatgcctaccaccccctac
cagatgccctcctccaatggcatttacccagcccagttttacggggagtataggggccag
gggtaccagactggggctggagcaggtctgacaccagaggaggtggagcagcaggccagg
ggagagctggggagacagctgagggctgcagacagccaggagttacaactcagcaacctc
ctatctagagacagactcagtgctgacggactggaccgcatggctcaactcagagctgac
ctgttgaccctgtacgagcgggtgatcctaacagacatagagttcagtgacagtcagaat
ctggaccaggctctatggaagaacgtgttctaccaggttatagagcgcttcagacagctc
ctcaaagaccctagtggagactcaaccctgcgcatcacccccatgctgctcactctgctg
gacgaggggacggtattctttgatgcactgctgcagaagcttcagacggtgtttcaattt
aaactggaggattacatggacggcatggccatgnntccactacgcaagacggtgaagtat
gctctgatcagtgcccagcggtgtttgatctgtcagggggacatcgcccgttaccgggag
caggccagcgactcggcgaactacggcaaggcccgcagctggtacctgaaggcccagcag
attgctcctaagaacggacggccttacaaccagctggccctgctggctgtttacacgaag
aggaagttggatgcagtgtattactacatgcgtagccttgctgcctccaaccccatcctc
actgccaaggagagtctcatgagtctgtttgaagaggccaaacgcaaggcggaccagatg
gagcggaggaggaagcaggagtcggagggggggtccaggggccccggggtccgaggagga
ggacggggggaggagggggccagggtggagatctgggtcggccctattggacaggcaggg
gttccatcatcacaccgcggaggcagcgagtccagcagagactctgaacaggaaggggaa
ctgggtaacctcagcccgagtgatctcaataagaggtttactctcagcttcctccacgct
cacggaaaactcttcactaaagtgggcatggagtcgttcccttcggtggccagtcgggtt
ctccaggagttcacggtgctgctccaacacagcccctcccctctgggcagcacacgcatg
ttgcagatcatcaccatcaacatgttcacgatacacaacgctcagagcagaggaggagac
agtgaggtgagatctgtgttacaggaacagactacagctctgggtctggccatgttctct
ctgctggtccaacgctgcacagagctgctgagagacacacccgcagagcccatcccagag
gaggagagagaagacgggcaggaggggatggtgagagtttctgcctttccattggacctg
agggagctgctgcctagcgtcaaggtctggtctgattggatgcttggacaccccaaccaa
tggaatcctccaccttgccgtatagactgtagtcttgatgtgtggcgtagcctggcagac
ctgtgtaatgcgttggcgcgtgtcgaccacggcgaggcgcctctgtacaaggcagacggg
gacggaggcgagggggatgaggagctccgcctgctgctattggaggaggacaggctactg
gccggcttcgtcccgctgctcgccgccccacaggaaccctgctacgtagactgcaccggg
gatacagcgatagctgctgactgtaaaagggtaacagtattgaagtatttcctggaggct
ctgtgtggacaggaagaacctctcctggcttttaaaggagggaagtacgtctccatggca
acctctccccaacccggtctccccggcgacgcccgcagcaggcaggactcgcagacagag
agaggtagtgatgacgtcatcgtggaggcggagtcgtctgtgtcggacggtgatgatggt
agtgaggatgacatccgagagctccgggccagacgcagcgccctcaccaacaaactggct
gagcagcagagacgcagggacaagatacaggcggtgttacagacgtgtggtcagttggag
ttagaggtccgtcctcttttcctggtccccgacaccaacggtttcatcgaccacctcacc
ggcctcaagacgctgcttcaggctgggacgtacattgtggtggtgcccctcatcgtgata
acagagttggatggtctggcaaaggggcaggagaactgcgatggctctggcagtgggcgt
ggtggcagtggttgtcgtggaaacagcggtggtggtggaccgacccacgcccggtcggtc
caggagaaagctaaggttgctgtggcgtttctggagcgagggttcgaggccagggagccc
tgtctcagagcgctgaccagcagaggaagtcaacttgagtctatcgccttccgcagcgaa
gacacctccggacaacagggaaacaatgatgatgtcatcttgtcctgctgtctccactac
tgcaaagatgaggctaaaagcttgatgcctgcacagacaaacggtccggtgcgtttgcgt
cgggaggtggttctcctgacagatgaccgtaacctgcgggtcaaagccctgaccaggaat
gtgccggtcagggacattcctgccttcctcacctgggccaaagtgggctga
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integrated database retrieval system
